Glyma19g01230 - SoyBase

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Report for Sequence Feature Glyma19g01230

Feature Type:	gene_model
Chromosome:	Gm19
Start:	844513
stop:	847507
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g01230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27990	AT	Annotation by Michelle Graham. TAIR10: Pre-rRNA-processing protein TSR2, conserved region \| chr5:10017358-10018265 FORWARD LENGTH=184	SoyBase	E_val: 1.00E-33	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4032	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR21250	Panther	UNCHARACTERIZED	JGI		ISS
PF10273	PFAM	Pre-rRNA-processing protein TSR2	JGI		ISS
UniRef100_G7LJ82	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pre-rRNA-processing protein TSR2-like protein n=1 Tax=Medicago truncatula RepID=G7LJ82_MEDTR	SoyBase	E_val: 9.00E-67	ISS
UniRef100_I1N5S8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5S8_SOYBN	SoyBase	E_val: 2.00E-142	ISS

Expression Patterns of Glyma19g01230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g01230

Paralog	Evidence	Comments
Glyma13g23820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g01230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g009300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g01230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g01230

Limit To All Plant Sequences

>Glyma19g01230.6   sequence type=transcript   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAATATAAAAATAATGGGGTGCATAAAACAATTTTCCTAGTTTTATTGCAACACGTACGGTACACAAACACAGCCCTAAATCCAGGCCCAAACCAAGACGTAGTTCTGCTTCTCAGTTCTCTCGAATCAATCCGGAATCCCAAACCCCTAATCCCTAATCAATCGCAAGTTCGAATCCCTAATTTCAACCTGTTCTTCCTCAACGTGCGTCGTGAGCGAGTTAAGGTTAAGGGAAAGACAAAGCGATTATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAGATAAAAAGTATTTAATTTTTTTAAGGATGTGTAGTCCTCGTTCATTTGCTTGTGCTTTTTGAGGTATTGCAAACCTTCTTGAGGTGTGTAACTATATATCTCGGATTTTTTTGTTTTACTTATTTTAATGTCTCCTCCGTCTGAGGTCTTTAGAAAAAAAATGGATGAGCATATGTTGTAGGAAATCCTACATTATTTTTTGGTCTGTCTATGAAACATTTTATGTTTGTAGTTTATGCTACCGAAAGTTGTGTCTTATCTTGCATTGAAGTGATCCAATTATCTTCCAGTAAAGTTGGGTCACATTGTTCTCATCAGTTCT

>Glyma19g01230.7   sequence type=transcript   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAATATAAAAATAATGGGGTGCATAAAACAATTTTCCTAGTTTTATTGCAACACGTACGGTACACAAACACAGCCCTAAATCCAGGCCCAAACCAAGACGTAGTTCTGCTTCTCAGTTCTCTCGAATCAATCCGGAATCCCAAACCCCTAATCCCTAATCAATCGCAAGTTCGAATCCCTAATTTCAACCTGTTCTTCCTCAACGTGCGTCGTGAGCGAGTTAAGGTTAAGGTCCCTTTGGGAAAAAAAGGGTTTATTGTGTTCTGCTGACACATTGAACTATTGAAGCAGGGAAAGACAAAGCGATTATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAGATAAAAAGTATTTAATTTTTTTAAGGATGTGTAGTCCTCGTTCATTTGCTTGTGCTTTTTGAGGTATTGCAAACCTTCTTGAGGTGTGTAACTATATATCTCGGATTTTTTTGTTTTACTTATTTTAATGTCTCCTCCGTCTGAGGTCTTTAGAAAAAAAATGGATGAGCATATGTTGTAGGAAATCCTACATTATTTTTTGGTCTGTCTATGAAACATTTTATGTTTGTAGTTTATGCTACCGAAAGTTGTGTCTTATCTTGCATTGAAGTGATCCAATTATCTTCCAGTAAAGTTGGGTCACATTGTTCTCATCAGTTCT

>Glyma19g01230.8   sequence type=transcript   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTACGGTACACAAACACAGCCCTAAATCCAGGCCCAAACCAAGACGTAGTTCTGCTTCTCAGTTCTCTCGAATCAATCCGGAATCCCAAACCCCTAATCCCTAATCAATCGCAAGTTCGAATCCCTAATTTCAACCTGTTCTTCCTCAACGTGCGTCGTGAGCGAGTTAAGGTTAAGCAGGGAAAGACAAAGCGATTATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAGATAAAAAGTATTTAATTTTTTTAAGGATGTGTAGTCCTCGTTCATTTGCTTGTGCTTTTTGAGGTATTGCAAACCTTCTTGAGGTGTGTAACTATATATCTCGGATTTTTTTGTTTTACTTATTTTAATGTCTCCTCCGTCTGAGGTCTTTAGAAAAAAAATGGATGAGCATATGTTGTAGGAAATCCTACATTATTTTTTGGTCTGTCTATGAAACATTTTATGTTTGTAGTTTATGCTACCGAAAGTTGTGTCTTATCTTGCATTGAAGTGATCCAATTATCTTCCAG

>Glyma19g01230.9   sequence type=transcript   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCAATCGCAAGTTCGAATCCCTAATTTCAACCTGTTCTTCCTCAACGTGCGTCGTGAGCGAGTTAAGGTCCCTTTGGGAAAAAAAGGGTTTATTGTGTTCTGCTGACACATTGAACTATTGAAGCAGGGAAAGACAAAGCGATTATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAGATAAAAAGTATTTAATTTTTTTAAGGATGTGTAGTCCTCGTTCATTTGCTTGTGCTTTTTGAGGTATTGCAAACCTTCTTGAGGTGTGTAACTATATATCTCGGATTTTTTTGTTTTACTTATTTTAATGTCTCCTCCGTCTGAGGTCTTTAGAAAAAAAATGGATGAGCATATGTTGTAGGAAATCCTACATTATTTTTTGGTCTGTCTATGAAACATTTTATGTTTGTAGTTTATGCTACCGAAAGTTGTGTCTTATCTTGCATTGAAGTGATCCAATTATCTTCCAGTAAAGTTGGGTCACATTGTTCT

Coding sequences of Glyma19g01230

Limit To All Plant Sequences

>Glyma19g01230.10   sequence type=CDS   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAG

>Glyma19g01230.6   sequence type=CDS   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAG

>Glyma19g01230.7   sequence type=CDS   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAG

>Glyma19g01230.8   sequence type=CDS   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAG

>Glyma19g01230.9   sequence type=CDS   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAG

Predicted protein sequences of Glyma19g01230

Limit To All Plant Sequences

>Glyma19g01230.10   sequence type=predicted peptide   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGSRRLLGQSVGVFNEGICLVLSRWSALRSAVENEWGGRESRLKADQLAGDILTWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIVNEDDSDEDGDHDEKMIVDDNSSNMNPEISTSDSNMNSVNRPVNEPLPKVSGKADDGWVVVSNKRNKGRKN*

>Glyma19g01230.6   sequence type=predicted peptide   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGSRRLLGQSVGVFNEGICLVLSRWSALRSAVENEWGGRESRLKADQLAGDILTWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIVNEDDSDEDGDHDEKMIVDDNSSNMNPEISTSDSNMNSVNRPVNEPLPKVSGKADDGWVVVSNKRNKGRKN*

>Glyma19g01230.7   sequence type=predicted peptide   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGSRRLLGQSVGVFNEGICLVLSRWSALRSAVENEWGGRESRLKADQLAGDILTWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIVNEDDSDEDGDHDEKMIVDDNSSNMNPEISTSDSNMNSVNRPVNEPLPKVSGKADDGWVVVSNKRNKGRKN*

>Glyma19g01230.8   sequence type=predicted peptide   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGSRRLLGQSVGVFNEGICLVLSRWSALRSAVENEWGGRESRLKADQLAGDILTWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIVNEDDSDEDGDHDEKMIVDDNSSNMNPEISTSDSNMNSVNRPVNEPLPKVSGKADDGWVVVSNKRNKGRKN*

>Glyma19g01230.9   sequence type=predicted peptide   gene model=Glyma19g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGSRRLLGQSVGVFNEGICLVLSRWSALRSAVENEWGGRESRLKADQLAGDILTWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIVNEDDSDEDGDHDEKMIVDDNSSNMNPEISTSDSNMNSVNRPVNEPLPKVSGKADDGWVVVSNKRNKGRKN*

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