Report for Sequence Feature Glyma19g01220
Feature Type: gene_model
Chromosome: Gm19
Start: 841255
stop: 843751
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g01220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G55250 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 46 Blast hits to 46 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20479302-20480324 FORWARD LENGTH=277
SoyBase E_val: 9.00E-109 ISS
GO:0000023 GO-bp
Annotation by Michelle Graham. GO Biological Process: maltose metabolic process
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0010027 GO-bp
Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization
SoyBase N/A ISS
GO:0019252 GO-bp
Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process
SoyBase N/A ISS
GO:0043085 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_D2DW88 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Calcium homeostasis regulater-like protein CHoR1 n=1 Tax=Phaseolus vulgaris RepID=D2DW88_PHAVU
SoyBase E_val: 7.00E-160 ISS
UniRef100_I1N5S4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5S4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g01220
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g01220
Paralog Evidence Comments
Glyma13g23810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g01220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g009200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g01220
Transcripts of Glyma19g01220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g01220.4 sequence type=transcript gene model=Glyma19g01220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AATCATATGACACTATGATGAAGTGACAGGAAGCAAGCAGCAAGTGGATAACATATATAAACCAGAAAGGCTAAGAACCACAAACTGAACAACCACCTTGAGTTGCAAAAACATGGTGGTTTTAAAGTCCACTTCTCTCACTTGCCACTTCTTCAACCTCTCTTCCTCCTCCTCCAAATTCACCTCCCCACAACACTCTCTCCGCCACCACCACCACCACCACCACCACCATGCTCACCCCACCACCACGAGACTCACTTCAAGAGTTGCACAGTTCACTGTTAAAGCCTACATGGAGAACCCCAACACGTTAGGTAGTTTCGCCAACAGGGTCATTGGTGCACTCCCCGTGGTGGGACTCATTGCCAGGATTCTCAGTGATGAAGGTGGCGTTGGAGATGACCTAGTGGATTTTGCTGAGTTCAGAAGGCGCGTTGGAAAGAAGTGTTCCCAAGCTGATTCCTCTGCCTTTTATCAGTTCCAAGATCGACGAGGAAGGGCAGGGGATCCTCTTTATGTTCTGTTATGCTGTTGGCTAGCAGCCATTGGTGCTGGTCTTCTCAAAACCGAGGATATTCTGGAAGGGGTGGCTCGGCTCCGGATCTCCAACGACATTGAATTTGAGGAGCAGAGTTTCATGGCTTTGATGAATGAGTCAAAGGAGAGACGGGCAAGGCAAAACGCTGATCCTCCTGCAGTCCCAATGGAGATTCGAGCTGGGAAGGCTCTTGATGCTATCTATGTGTGTTGCTTTGGAAAGGACTCCATAGAGGAAGAAGACGAGAGACTTCTGACTGCAATGCTCGGTGCTGTTTTCCCGTCAGTTCAGCGCGAAGAGATCCGGCACCTTGTCAAAGACAAGGCAGAGAAAGTAGCAGCAGGAGTTGATGAGGAATATGTTTCAGAACTCAAGCCTCTATCGAAAGAAGCTGTGGAACTACAAATGAAAGACCTTCAGTTCCTTCAACAAAATAGTGAGACTTAACTAGGTGAAGCCTGTGATTTCCACTGCATAGTGATGCATTGAATGAAATTATATTTTGCAAACTAAAGTTGCTTTAGCCTTTAGGCTACTCACAGAAAAAAAGACAGTCCTCTTATATCATACTCTATTATTTTTCAGATCCATATTGAAATGTGGGATCATGACTTTTTTGAAAATGCGGAAATTTCATGTAATTACTGTTAGCAGTATAAATGGACAAGGTAGTAAATCATGTCTCCAATGCATTTTTTATTTATTTAAACCCTTGAAGTGATCTAGTTCTTTCCTTCATCTCCACTCTTGAAATGAAGA
Coding sequences of Glyma19g01220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g01220.3 sequence type=CDS gene model=Glyma19g01220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGGTTTTAAAGTCCACTTCTCTCACTTGCCACTTCTTCAACCTCTCTTCCTCCTCCTCCAAATTCACCTCCCCACAACACTCTCTCCGCCACCACCACCACCACCACCACCACCATGCTCACCCCACCACCACGAGACTCACTTCAAGAGTTGCACAGTTCACTGTTAAAGCCTACATGGAGAACCCCAACACGTTAGGTAGTTTCGCCAACAGGGTCATTGGTGCACTCCCCGTGGTGGGACTCATTGCCAGGATTCTCAGTGATGAAGGTGGCGTTGGAGATGACCTAGTGGATTTTGCTGAGTTCAGAAGGCGCGTTGGAAAGAAGTGTTCCCAAGCTGATTCCTCTGCCTTTTATCAGTTCCAAGATCGACGAGGAAGGGCAGGGGATCCTCTTTATGTTCTGTTATGCTGTTGGCTAGCAGCCATTGGTGCTGGTCTTCTCAAAACCGAGGATATTCTGGAAGGGGTGGCTCGGCTCCGGATCTCCAACGACATTGAATTTGAGGAGCAGAGTTTCATGGCTTTGATGAATGAGTCAAAGGAGAGACGGGCAAGGCAAAACGCTGATCCTCCTGCAGTCCCAATGGAGATTCGAGCTGGGAAGGCTCTTGATGCTATCTATGTGTGTTGCTTTGGAAAGGACTCCATAGAGGAAGAAGACGAGAGACTTCTGACTGCAATGCTCGGTGCTGTTTTCCCGTCAGTTCAGCGCGAAGAGATCCGGCACCTTGTCAAAGACAAGGCAGAGAAAGTAGCAGCAGGAGTTGATGAGGAATATGTTTCAGAACTCAAGCCTCTATCGAAAGAAGCTGTGGAACTACAAATGAAAGACCTTCAGTTCCTTCAACAAAATAGTGAGACTTAA
>Glyma19g01220.4 sequence type=CDS gene model=Glyma19g01220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGGTTTTAAAGTCCACTTCTCTCACTTGCCACTTCTTCAACCTCTCTTCCTCCTCCTCCAAATTCACCTCCCCACAACACTCTCTCCGCCACCACCACCACCACCACCACCACCATGCTCACCCCACCACCACGAGACTCACTTCAAGAGTTGCACAGTTCACTGTTAAAGCCTACATGGAGAACCCCAACACGTTAGGTAGTTTCGCCAACAGGGTCATTGGTGCACTCCCCGTGGTGGGACTCATTGCCAGGATTCTCAGTGATGAAGGTGGCGTTGGAGATGACCTAGTGGATTTTGCTGAGTTCAGAAGGCGCGTTGGAAAGAAGTGTTCCCAAGCTGATTCCTCTGCCTTTTATCAGTTCCAAGATCGACGAGGAAGGGCAGGGGATCCTCTTTATGTTCTGTTATGCTGTTGGCTAGCAGCCATTGGTGCTGGTCTTCTCAAAACCGAGGATATTCTGGAAGGGGTGGCTCGGCTCCGGATCTCCAACGACATTGAATTTGAGGAGCAGAGTTTCATGGCTTTGATGAATGAGTCAAAGGAGAGACGGGCAAGGCAAAACGCTGATCCTCCTGCAGTCCCAATGGAGATTCGAGCTGGGAAGGCTCTTGATGCTATCTATGTGTGTTGCTTTGGAAAGGACTCCATAGAGGAAGAAGACGAGAGACTTCTGACTGCAATGCTCGGTGCTGTTTTCCCGTCAGTTCAGCGCGAAGAGATCCGGCACCTTGTCAAAGACAAGGCAGAGAAAGTAGCAGCAGGAGTTGATGAGGAATATGTTTCAGAACTCAAGCCTCTATCGAAAGAAGCTGTGGAACTACAAATGAAAGACCTTCAGTTCCTTCAACAAAATAGTGAGACTTAA
Predicted protein sequences of Glyma19g01220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g01220.3 sequence type=predicted peptide gene model=Glyma19g01220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVVLKSTSLTCHFFNLSSSSSKFTSPQHSLRHHHHHHHHHAHPTTTRLTSRVAQFTVKAYMENPNTLGSFANRVIGALPVVGLIARILSDEGGVGDDLVDFAEFRRRVGKKCSQADSSAFYQFQDRRGRAGDPLYVLLCCWLAAIGAGLLKTEDILEGVARLRISNDIEFEEQSFMALMNESKERRARQNADPPAVPMEIRAGKALDAIYVCCFGKDSIEEEDERLLTAMLGAVFPSVQREEIRHLVKDKAEKVAAGVDEEYVSELKPLSKEAVELQMKDLQFLQQNSET*
>Glyma19g01220.4 sequence type=predicted peptide gene model=Glyma19g01220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVVLKSTSLTCHFFNLSSSSSKFTSPQHSLRHHHHHHHHHAHPTTTRLTSRVAQFTVKAYMENPNTLGSFANRVIGALPVVGLIARILSDEGGVGDDLVDFAEFRRRVGKKCSQADSSAFYQFQDRRGRAGDPLYVLLCCWLAAIGAGLLKTEDILEGVARLRISNDIEFEEQSFMALMNESKERRARQNADPPAVPMEIRAGKALDAIYVCCFGKDSIEEEDERLLTAMLGAVFPSVQREEIRHLVKDKAEKVAAGVDEEYVSELKPLSKEAVELQMKDLQFLQQNSET*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
