Glyma19g01210 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g01210

Feature Type:	gene_model
Chromosome:	Gm19
Start:	830858
stop:	833715
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g01210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14780	AT	Annotation by Michelle Graham. TAIR10: formate dehydrogenase \| chr5:4777043-4779190 FORWARD LENGTH=384	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0048037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cofactor binding	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
KOG0069	KOG	Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)	JGI		ISS
PTHR10996	Panther	2-HYDROXYACID DEHYDROGENASE	JGI		ISS
PTHR10996:SF16	Panther	2-HYDROXYACID DEHYDROGENASE-RELATED	JGI		ISS
PF00389	PFAM	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	JGI		ISS
PF02826	PFAM	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	JGI		ISS
UniRef100_D2DWA5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Formate dehydrogenase n=1 Tax=Phaseolus vulgaris RepID=D2DWA5_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_I1N5S0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5S0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g01210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g01210

Paralog	Evidence	Comments
Glyma13g23790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g01210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g009100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g01210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g01210

Limit To All Plant Sequences

>Glyma19g01210.1   sequence type=CDS   gene model=Glyma19g01210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGATCCCACACTAGCACAACAGCATCTAGTCAAAGTCCACACAACAACACACGAAACAGTTGTTACCACACACAATCATAACCAAACACCCTCAATAAATGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAATATGCTAAATTGAATCCAAATTTTGTTGGATGTGTTGAAGGTGCATTGGGAATACGTGAGTGGCTGGAATCACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCACCCCGCCTATGTCACCGCAGAAAGAATTAAGAAAGCCAAAAATTTGGAGCTGCTTTTGACTGCTGGCATTGGTTCTGATCATGTTGATCTCAAAGCTGCAGCTGCTGCTGGTTTAACTGTGGCAGAGGTCACAGGAAGCAACGTTGTGTCGGTTGCGGAGGACGAACTCATGAGAATCCTCATTCTAATGAGGAATTTCTTGCCAGGGTACCATCAGGCTGTTAATGGGGAATGGAATGTTGCTGGCATTGCACATAGAGCTTATGATCTTGAAGGAAAGACAGTAGGAACCGTTGGCGCGGGTCGAATTGGGAAGCTTTTGCTCCAGAGGTTGAAACCTTTTAGCTGTAATCTTCTTTATTTTGATCGACTTAGGATAGATCCTGAATTGGAGAAAGAGATTGGAGCAAAATTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATTGTTAACAATGCTCGAGGGGCAATTGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTGAAGACTTTCCAGAACAAAACTACATTGTGAAGGAGGGTCAACTTGCTAGCCAATACCGATGA

Predicted protein sequences of Glyma19g01210

Limit To All Plant Sequences

>Glyma19g01210.1   sequence type=predicted peptide   gene model=Glyma19g01210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDPTLAQQHLVKVHTTTHETVVTTHNHNQTPSINASGEKKKIVGVFYKGNEYAKLNPNFVGCVEGALGIREWLESQGHQYIVTDDKEGPDSELEKHIPDAHVIISTPFHPAYVTAERIKKAKNLELLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFLPGYHQAVNGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFSCNLLYFDRLRIDPELEKEIGAKFEEDLDAMLPKCDVIVINTPLTEQTRGLFDKNRIAKCKKGVLIVNNARGAIADTQAIADACSSGHVAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRHFKGEDFPEQNYIVKEGQLASQYR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain