SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14780 | AT | Annotation by Michelle Graham. TAIR10: formate dehydrogenase | chr5:4777043-4779190 FORWARD LENGTH=384 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0048037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cofactor binding | SoyBase | N/A | ISS |
| GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
| KOG0069 | KOG | Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) | JGI | ISS | |
| PTHR10996 | Panther | 2-HYDROXYACID DEHYDROGENASE | JGI | ISS | |
| PTHR10996:SF16 | Panther | 2-HYDROXYACID DEHYDROGENASE-RELATED | JGI | ISS | |
| PF00389 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | JGI | ISS | |
| PF02826 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | JGI | ISS | |
| UniRef100_D2DWA6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Formate dehydrogenase n=1 Tax=Phaseolus vulgaris RepID=D2DWA6_PHAVU | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N5R9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5R9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g01200 not represented in the dataset |
Glyma19g01200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g009000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g01200.1 sequence type=CDS gene model=Glyma19g01200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCATGAAACGTGCTGTTCAATCCCTGCTTGCCTCATCTTCCACCCTCACCAGGAACCTTCATGCCTCAGGAGAAAAAAAGAAGATTGTAGGGGTGTTCTACAAAGGGAATGAGTATGCTTCGAATCCCAATTTTGTGGGATGTGTTGAAAGAGCATTGGGTATACGTGAGTGGTTGGAATCACAGGGTCACCAGTACATAGTCACTGATGACAAAGAAGGACCCGATTCAGAACTAGAGAAACACATTCCTGATGCCAATGTCATCATATCTACTCCATTTCACCCTGCCTATATCACCGCAGAAAGAATTAAGAAAGCCAAAAATTTGGAGCTGCTTTTGACTGCTGGCATTGGTTCTGATCACGTTGATCTCAAGGCAGCAGCTGCTGCTGGTTTAACTGTGGCAGAGATCACAGGAAGCAACGTAGTCTCGGTCGCGGAGGATGAACTCCTCAGAATCCTTGTTCTGGTGAGGAATTTCTTGCCAGGGTACCATCAGGCTGTTAATGGGGAATGGAATGTTGCTGGCATTGCACATAGAGCTTATGATCTTGAAGGAAAGACAGTAGGAACCGTTGGCGCGGGTCGAATTGGGAAGCTTTTGCTCCAGAGGCTGAAGCCTTTTAACTGTAATCTTCTGTACTATGATAGACTTAGGATGAATACTGATTTGGAGAAAGAGATTGGAGCAAAGTTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGAGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGATTGTTAACAATGCTCGAGGGGCAATTATGGACACCCAAGCAATTGCTGATGCTTGCTCTAGTGGCCACGTTGCAGGCTATGGTGGTGATGTTTGGCCCATACAACCAGCTCCAAAGGACCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTGAAGACTTTCCAGAACAAAACTACATTGTGAAGGAGGGTCAACTTGCAAGCCAGTATCGTTGA
>Glyma19g01200.1 sequence type=predicted peptide gene model=Glyma19g01200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMKRAVQSLLASSSTLTRNLHASGEKKKIVGVFYKGNEYASNPNFVGCVERALGIREWLESQGHQYIVTDDKEGPDSELEKHIPDANVIISTPFHPAYITAERIKKAKNLELLLTAGIGSDHVDLKAAAAAGLTVAEITGSNVVSVAEDELLRILVLVRNFLPGYHQAVNGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNCNLLYYDRLRMNTDLEKEIGAKFEEDLDAMLPKCDVIVINMPLTEQTRGLFDKNRIAKCKKGVVIVNNARGAIMDTQAIADACSSGHVAGYGGDVWPIQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRHFKGEDFPEQNYIVKEGQLASQYR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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