SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| UniRef100_B9RUT5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein farnesyltransferase beta subunit, putative n=1 Tax=Ricinus communis RepID=B9RUT5_RICCO | SoyBase | E_val: 4.00E-15 | ISS |
| UniRef100_UPI000233F16F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F16F related cluster n=1 Tax=unknown RepID=UPI000233F16F | SoyBase | E_val: 2.00E-50 | ISS |
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Glyma19g01190 not represented in the dataset |
Glyma19g01190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g23780 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g008900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g01190.1 sequence type=CDS gene model=Glyma19g01190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGAAGAGAGCGAGAAAGAGACGAATCCGTCGTCGGCGACGGCGGCGCCGTGTCCGACGGCGAGTCAGCGGGACCAGTGGATGGTAGAGTCGCAGGTGTTTCAGATTTACCAACTCTTCGCCACCATTCCTCGCAACGCCCAAAACCTCATGTTGGAGCTTCAACGCGATAATCACGTCTCCAAAGATCTCCGCCATCTCAATTCCGCATTTTCCGTCTTGGACGCTAAGTAA
>Glyma19g01190.1 sequence type=predicted peptide gene model=Glyma19g01190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEESEKETNPSSATAAPCPTASQRDQWMVESQVFQIYQLFATIPRNAQNLMLELQRDNHVSKDLRHLNSAFSVLDAK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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