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Report for Sequence Feature Glyma19g01190

Feature Type:gene_model
Chromosome:Gm19
Start:822048
stop:822374
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
UniRef100_B9RUT5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein farnesyltransferase beta subunit, putative n=1 Tax=Ricinus communis RepID=B9RUT5_RICCO SoyBaseE_val: 4.00E-15ISS
UniRef100_UPI000233F16FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F16F related cluster n=1 Tax=unknown RepID=UPI000233F16F SoyBaseE_val: 2.00E-50ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01190 not represented in the dataset

Glyma19g01190 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g23780 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g008900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g01190.1   sequence type=CDS   gene model=Glyma19g01190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAAGAGAGCGAGAAAGAGACGAATCCGTCGTCGGCGACGGCGGCGCCGTGTCCGACGGCGAGTCAGCGGGACCAGTGGATGGTAGAGTCGCAGGTGTTTCAGATTTACCAACTCTTCGCCACCATTCCTCGCAACGCCCAAAACCTCATGTTGGAGCTTCAACGCGATAATCACGTCTCCAAAGATCTCCGCCATCTCAATTCCGCATTTTCCGTCTTGGACGCTAAGTAA

>Glyma19g01190.1   sequence type=predicted peptide   gene model=Glyma19g01190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEESEKETNPSSATAAPCPTASQRDQWMVESQVFQIYQLFATIPRNAQNLMLELQRDNHVSKDLRHLNSAFSVLDAK*







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