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Report for Sequence Feature Glyma19g01180

Feature Type:gene_model
Chromosome:Gm19
Start:816223
stop:817923
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36330AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr2:15233620-15235298 FORWARD LENGTH=283 SoyBaseE_val: 9.00E-28ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_D2DWA8UniRef Annotation by Michelle Graham. Most informative UniRef hit: MtN24-like protein n=1 Tax=Phaseolus vulgaris RepID=D2DWA8_PHAVU SoyBaseE_val: 5.00E-41ISS
UniRef100_UPI000233F311UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F311 related cluster n=1 Tax=unknown RepID=UPI000233F311 SoyBaseE_val: 5.00E-102ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01180 not represented in the dataset

Glyma19g01180 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g23770 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g008800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g01180.2   sequence type=CDS   gene model=Glyma19g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAAAAAAGTGCGTAGAGGGTCATCAACAAACAAATGGTATGGTTTCTACTCGGATTCATCATCATCTTCGTCTCAACATTCTCAAACACATCGGTATGACTACGAGGAATTCAAGTACTTCTTATCAGTGAATATAATAGGGTTCGTGTATTCTGGATTGCAAATATGTGATATAGTGAAGTACATGATTACTAAAAGACACACAATGGACCCCAAGCTTCGGGTTTACTTCAACTTTGCTATGGATCAGGTCTTGGCATATCTTCTAATGTCAGCATCATCTTCAGCTGCCACCACAACCTATTATTGGACAAATAGTGCTTCAGCTGCAGACAAGTACGTGGAAATGGCAAAAGCATCTGTTGCGTTATCCTTCGTTGCATTTGTGGCATTTGCCTCTTCCTCTGTTGTTTCTGCTTTCATTTTTTGTAGATTCAACTAG

>Glyma19g01180.2   sequence type=predicted peptide   gene model=Glyma19g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
EKKVRRGSSTNKWYGFYSDSSSSSSQHSQTHRYDYEEFKYFLSVNIIGFVYSGLQICDIVKYMITKRHTMDPKLRVYFNFAMDQVLAYLLMSASSSAATTTYYWTNSASAADKYVEMAKASVALSFVAFVAFASSSVVSAFIFCRFN*







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