Glyma19g01100 - SoyBase

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Report for Sequence Feature Glyma19g01100

Feature Type:	gene_model
Chromosome:	Gm19
Start:	773859
stop:	777647
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g01100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G27960	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:10380513-10382593 REVERSE LENGTH=663	SoyBase	E_val: 0	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
KOG1840	KOG	Kinesin light chain	JGI		ISS
PTHR19959	Panther	KINESIN LIGHT CHAIN	JGI		ISS
UniRef100_D2DWB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinesin light chain-like protein n=1 Tax=Phaseolus vulgaris RepID=D2DWB2_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_I1N5R3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5R3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g01100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g01100

Paralog	Evidence	Comments
Glyma05g08530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g01100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g008200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g01100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g01100

Limit To All Plant Sequences

>Glyma19g01100.1   sequence type=CDS   gene model=Glyma19g01100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTGGTCTGGCCATGGATGAATTCAATGTAAATAATGCAGCAGAGGAACCAAGTGGGAGTTATAAGGAAAACTTTGCTCAACAAGCATCACCAAGGAGTACACTGAGTCCAAGAAGCATTCAGAGTGATTCAATTGATTTGGCAATTGATGGAGTGGTGGATACCTCAATTGAGCAATTGTATCACAATGTGTGTGAAATGAGGAGCTCTGATCATTCACCCTCAAGGGCTAGTTTCTACTCTTATGATTATGATGGTGAGTCCAGGATTGATTCAGAACTAGGCCATCTTGCTGGTGATATTGTGGATTTGGAGATCACAAAGGAGGTGGTTACAGAGAATAAAGAGGACTACAATGGCAATGCTAGTGGCAAAACTCCTGAGAAAGATGTTGTTGTGTCAAAGAAGGATGAAAAAGTCATTGAAGGATCATCCAAGGCAACTCCTAAGAGGAGCGAAAAGGGTGTCAAAAAAGCGAACAGTGCTAATTACCGGACAGGGAAGCATAGGAGGCACCTTGGTTTGAAGGCGATCGAGGAGCGTATTGCTGCAGGGTTAGATAATCCTGACTTGGGACCATTTTTGCTGAAGCAAACAAGAGATATGATCTCCTCAGGTGAGAATCCCCGAAAAACGCTTGATTTCGCTCTTAGAGCTTTGAAATCATTTGAGATTTGTGCAGATGGGAAACCAAGTTTAGATATGGTAATGTGCCTGCATGTCTTGGCTACAATATACTGTAATTTAGGACAGTACAATGAGGCCATTCCGGTTCTGGAGCGTTCAATTGATATTCCGGTGTTGGAGGATGGCCAAGATCATGCACTGGCTAAGTTTGCAGGGTGCATGCAATTGGGAGACACTTATGCAATGATGGGGCAGATTGAGAATTCCCTGCTGTTTTATACAGCAGGTCTTGAGATTCAAGGGCAGGTCTTGGGGGAAACAGACCCGAGATTCGGTGAGACGTGTCGCTATGTGGCCGAGGCACATGTTCAGGCACTGCAGTTTGATGAGGCTGAGAAGCTGTGCCAGATGGCTCTTGACATTCACAGGGGAAATGGAGCTCCTGCTTCCATCGAGGAAGCTGCTGATAGGAGACTAATGGGGCTTATCTGTGACTCAAAGGGTGATTATGAAGCTGCTCTAGAGCATTATGTTTTGGCAAGCATGGCTATGGCTGCAAATGATCATGAAGTAGATGTGGCTTCAGTTGATTGCAGCATAGGTGATGCCTATTTGGCGTTGGCGCGCTACGATGAGGCAGTGTTTTCTTATCAGAAAGCACTCACTGTGTTCAAATCAACAAAAGGAGAGAATCATCCAACAGTTGCTTCAGTCTATGTGAGGTTGGCTGATCTGTACAACAAAATTGGCAAGTTCAAGGAGTCTAAGTCTTACTGTGAAAATGCACTCAGAATTTTCGGGAAGATCAAGCCAGGGGTCCCCTCAGAAGAGATTGCTAGTGGCTTGATAGATGTTGCTGCAATCTATCAATCCATGAATGATTTGGAGAAAGGATTGAAGTTGCTCAAAAAGGCCTTGAAGATATATGGCAATGCTCCTGGTCAGCAAAGCACTGTTGCAGGAATTGAGGCCCAAATGGGGGTTATGTATTACATGCTTGGGAACTATTCTGACTCTTACAACATCTTCAAAAGCGCCATCGCCAAATTTCGCGCCAGCGGAGAGAAGAAAACTGCTTTGTTTGGGATTGCTTTGAACCAAATGGGCCTTGCCTGTGTGCAGTGTTATGCTATAAATGAGGCAGCAGATTTGTTTGAAGAGGCCAGAACTATATTGGAAAAAGAATATGGTCCTTATCATCCAGACACCTTAGGGGTCTATAGCAATCTAGCAGGCACCTATGATGCAATGGGAAGAGTGGATGATGCCATTGAAATTTTGGAATATGTAGTTGGCATGAGAGAAGAGAAGCTAGGAACAGCAAATCCTGATGTGGATGATGAGAAACGTAGGTTGGAAGAGTTGTTGAAAGAATCCGGCAGGGCACGGAACAGGAGATCAAGAAGATCATTGGAAACTCTTCTTGACACCCACTCTCAGCTTGTGAAAAACAATGGCATTAAGGTCCTATAA

Predicted protein sequences of Glyma19g01100

Limit To All Plant Sequences

>Glyma19g01100.1   sequence type=predicted peptide   gene model=Glyma19g01100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPGLAMDEFNVNNAAEEPSGSYKENFAQQASPRSTLSPRSIQSDSIDLAIDGVVDTSIEQLYHNVCEMRSSDHSPSRASFYSYDYDGESRIDSELGHLAGDIVDLEITKEVVTENKEDYNGNASGKTPEKDVVVSKKDEKVIEGSSKATPKRSEKGVKKANSANYRTGKHRRHLGLKAIEERIAAGLDNPDLGPFLLKQTRDMISSGENPRKTLDFALRALKSFEICADGKPSLDMVMCLHVLATIYCNLGQYNEAIPVLERSIDIPVLEDGQDHALAKFAGCMQLGDTYAMMGQIENSLLFYTAGLEIQGQVLGETDPRFGETCRYVAEAHVQALQFDEAEKLCQMALDIHRGNGAPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMAMAANDHEVDVASVDCSIGDAYLALARYDEAVFSYQKALTVFKSTKGENHPTVASVYVRLADLYNKIGKFKESKSYCENALRIFGKIKPGVPSEEIASGLIDVAAIYQSMNDLEKGLKLLKKALKIYGNAPGQQSTVAGIEAQMGVMYYMLGNYSDSYNIFKSAIAKFRASGEKKTALFGIALNQMGLACVQCYAINEAADLFEEARTILEKEYGPYHPDTLGVYSNLAGTYDAMGRVDDAIEILEYVVGMREEKLGTANPDVDDEKRRLEELLKESGRARNRRSRRSLETLLDTHSQLVKNNGIKVL*

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