Glyma19g01070 - SoyBase

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Report for Sequence Feature Glyma19g01070

Feature Type:	gene_model
Chromosome:	Gm19
Start:	755801
stop:	763743
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g01070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G27930	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 35 Blast hits to 35 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:10369593-10372318 REVERSE LENGTH=425	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0031307	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to mitochondrial outer membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N5R0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5R0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8W106	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g27930/K24A2_2 n=1 Tax=Arabidopsis thaliana RepID=Q8W106_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g01070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g01070

Paralog	Evidence	Comments
Glyma05g08561	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g01070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g007900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g01070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g01070

Limit To All Plant Sequences

>Glyma19g01070.1   sequence type=CDS   gene model=Glyma19g01070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAAGTGGTTGTTCTCTCGGGAGCCAGCGCCGCCGCCGCCGCCGGTGGTTCTGGTACCGCCGCTCTTCGACTTCCCTCCCCTCGCCGCGCGCAACCGCATGCTCCATTCCTCCTACGACGTCGTTTTCGGCAAGCTCGCCCTCACTTCGCTCTTCGAGGACTACTTCCACCAGGCCAGGAACTTCACCACCAGAATCATGCTCAAGCCGATCGAGGATCCTCACGTCGATCTCATTGCAACCGTTTCGGGTCCTCTTGATCACAAGCCAAAAGACAGTATTGCCGGAGATGCATTGTTTCGCTGGCAAAGTGATGTTAATGATCCTCATACGTTTATGGACCTTTATGTATCCACGTCTAATCCGATTTTGCAGATGAGATCGTGCGCTTACTATCCCAAATATGGATTTGGGGCTTTTGGAGTGTTTCCTCTGCTGTTGAAGAAAAGAGAATCCTCCCAAGATTATGGCTTGATGGGGTTGAGATATGGTTCTGGAAATCTATCCTTTGGAGTCACACTTTTGCCTTTTGCCATGAAAGATGAATTACCAAAAAGTGCATGGCTGGTAAGCAAGATGGGAAGGTTGACTGCTGGGGTGCAGTATGAGCCACAACAAGGAAATGCAAAACTTTCAAATTTGATGAACTGGAGTTGTGCCATGGGCTATGGTGTTGGATCAGGCAGCCCCTTGTGTCCATCCTTCAATTTCAACCTTGAGCTTGTCAAAAGCTCTCAGTTTATTGCCTCGTTCTATCAACATATGGTTGTTCAAAGACGGAACCCCCTTGAAGAGAATTCCGTTGTTGGAATTACAAACTACATTGATTTTGGGTTTGAGTTACAAACATGTGTTGATGACGCCATAGCAGAAAACAATATGTTAGACCCCACCTTTCGAATAGGGGCATCCTGGCAGGCTAATAAAAACTTCTTGCTGAAGGCAAAGGTTGGACCTCGTAGCTCATCAATGGCATTAGCATTCAAGTCATGGTGGAAACCTTCTTTCACTTTCAGCATTTCAGCCACTAGAGATCGTGCTGATGGTAAAATGCAATACGGATTTGGCATCCAAAGTGAGAGTCTCAGGGAAGCCAGTTATCAAAGAGCTGATCCCAATTATGTAATGCTCACGCAAAGCAAGGAACACTTAGCAAAGGGCATTGTCTGGAAAGCAGGGAAGCGACCTATGCTAAAATCCGACATAGATGCGGGACATTTTGATGGTCTACCTAGAGAATTACAACCACTTGATAAAATTTTGTAA

Predicted protein sequences of Glyma19g01070

Limit To All Plant Sequences

>Glyma19g01070.1   sequence type=predicted peptide   gene model=Glyma19g01070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWKWLFSREPAPPPPPVVLVPPLFDFPPLAARNRMLHSSYDVVFGKLALTSLFEDYFHQARNFTTRIMLKPIEDPHVDLIATVSGPLDHKPKDSIAGDALFRWQSDVNDPHTFMDLYVSTSNPILQMRSCAYYPKYGFGAFGVFPLLLKKRESSQDYGLMGLRYGSGNLSFGVTLLPFAMKDELPKSAWLVSKMGRLTAGVQYEPQQGNAKLSNLMNWSCAMGYGVGSGSPLCPSFNFNLELVKSSQFIASFYQHMVVQRRNPLEENSVVGITNYIDFGFELQTCVDDAIAENNMLDPTFRIGASWQANKNFLLKAKVGPRSSSMALAFKSWWKPSFTFSISATRDRADGKMQYGFGIQSESLREASYQRADPNYVMLTQSKEHLAKGIVWKAGKRPMLKSDIDAGHFDGLPRELQPLDKIL*

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