Glyma19g01060 - SoyBase

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Report for Sequence Feature Glyma19g01060

Feature Type:	gene_model
Chromosome:	Gm19
Start:	747191
stop:	753044
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g01060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G27925	AT	Annotation by Michelle Graham. TAIR10: DegP protease 1 \| chr3:10366659-10368864 REVERSE LENGTH=439	SoyBase	E_val: 0	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0010206	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II repair	SoyBase	N/A	ISS
GO:0010304	GO-bp	Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process	SoyBase	N/A	ISS
GO:0015996	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0030163	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0031977	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
KOG1320	KOG	Serine protease	JGI		ISS
PTHR22939	Panther	SERINE PROTEASE FAMILY S1C HTRA-RELATED	JGI		ISS
PTHR22939:SF21	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00089	PFAM	Trypsin	JGI		ISS
UniRef100_D2DWB6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine-type peptidase n=1 Tax=Phaseolus vulgaris RepID=D2DWB6_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_I1N5Q9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5Q9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g01060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01060 not represented in the dataset	Glyma19g01060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g01060

Paralog	Evidence	Comments
Glyma05g08580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g01060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g007800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g01060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g01060

Limit To All Plant Sequences

>Glyma19g01060.1   sequence type=CDS   gene model=Glyma19g01060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTTGTTCACTCATTTCCACACTCTTCCCTTCTCCTTCTTCTTCTTCTTTTTCACTCTCTCGTTCTTCCTCAAACACCACCAAACCAACCACCATTCACCTCTCCAAATCCCTCCATCTCCAAACTCCCATCCTCTTCCTCCTTCGCCCCCCAAACCCAAAACCGACACTTCCAATAATACCCCTCTTCCCCAAACTCACCATTCCCAACTCCCTTCTCCTTCTCTGCACCTCCCTCGCTCTCTCCTTCACTCTCCTCCTCTCCCCCGCCGACTCCGCCGCCGCCTTTGTTGTCACCTCCCCAAGGAAGCTCCAGTCCGATGAACTCGCCACCGTCCGCCTCTTCCAAGAGAACACTCCCTCCGTTGTCTACATAACCAACCTTGCTGTCAAGCAGGATGCGTTTACATTGGACGTGTTGGAGGTTCCTCAGGGGTCAGGATCTGGCTTTGTTTGGGATAAGGAGGGTCATATTGTGACCAATTATCACGTTATCCGTGGTGCCTCTGATCTCAAGGTCACTCTTGCTGACCAGTCAACTTACGATGCCAACGTTGTTGGTTTTGACCAAGACAAGGATGTTGCGGTGCTGCGTGTTGACGCACCTAAAGACAAGCTCAGGCCTATACCTATTGGGGTCTCTGCTGACCTGCTTGTTGGTCAGAAGGTTTATGCTATTGGGAACCCGTTTGGACTTGACCACACACTCACAACTGGTGTCATTAGTGGACTTCGGCGAGAAATTAGTTCTGCTGCAACTGGTCGTCCAATTCAAGATGTTATACAGACAGATGCAGCAATTAATCCTGGCAACAGTGGAGGGCCTCTCTTAGATAGTTCTGGAAACCTCATTGGGATAAATACAGCAATATATTCCCCATCTGGTGCATCCTCTGGTGTTGGATTTTCTATTCCAGTGGACACTGTAAATGGTATTGTTGACCAGTTGGTGAAGTTTGGGAAGGTTACAAGACCTATTTTAGGGATTAAGTTTGCCCCTGATCAGTCTGTGGAGCAGTTGGGAGTAAGTGGAGTGCTTGTCTTAGATGCTCCTGCCAATGGTCCTGCTGGGAAAGCAGGCTTGCAATCAACAAAGCGTGACTCTTATGGTAGACTCATTTTAGGTGACATCATAACATCTGTGAATGATAAGAAGGTTACTAATGGAAGTGATTTATACAGAATTCTTGACCAGTGTAAAGTGGGTGATAAGGTGATTGTGGAGGTGTTGAGAGGTGACCACAAGGAGAAGATACCCGTCATTCTGGAGCCAAAGCCTGATGAATCATGA

Predicted protein sequences of Glyma19g01060

Limit To All Plant Sequences

>Glyma19g01060.1   sequence type=predicted peptide   gene model=Glyma19g01060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATCSLISTLFPSPSSSSFSLSRSSSNTTKPTTIHLSKSLHLQTPILFLLRPPNPKPTLPIIPLFPKLTIPNSLLLLCTSLALSFTLLLSPADSAAAFVVTSPRKLQSDELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEVPQGSGSGFVWDKEGHIVTNYHVIRGASDLKVTLADQSTYDANVVGFDQDKDVAVLRVDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPANGPAGKAGLQSTKRDSYGRLILGDIITSVNDKKVTNGSDLYRILDQCKVGDKVIVEVLRGDHKEKIPVILEPKPDES*

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