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Report for Sequence Feature Glyma19g01060

Feature Type:gene_model
Chromosome:Gm19
Start:747191
stop:753044
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G27925AT Annotation by Michelle Graham. TAIR10: DegP protease 1 | chr3:10366659-10368864 REVERSE LENGTH=439 SoyBaseE_val: 0ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0010206GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II repair SoyBaseN/AISS
GO:0010304GO-bp Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0030163GO-bp Annotation by Michelle Graham. GO Biological Process: protein catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009543GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0031977GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004252GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity SoyBaseN/AISS
GO:0008236GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity SoyBaseN/AISS
KOG1320 KOG Serine protease JGI ISS
PTHR22939Panther SERINE PROTEASE FAMILY S1C HTRA-RELATED JGI ISS
PTHR22939:SF21Panther SUBFAMILY NOT NAMED JGI ISS
PF00089PFAM Trypsin JGI ISS
UniRef100_D2DWB6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine-type peptidase n=1 Tax=Phaseolus vulgaris RepID=D2DWB6_PHAVU SoyBaseE_val: 0ISS
UniRef100_I1N5Q9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5Q9_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01060 not represented in the dataset

Glyma19g01060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g08580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g007800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g01060.1   sequence type=CDS   gene model=Glyma19g01060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTTGTTCACTCATTTCCACACTCTTCCCTTCTCCTTCTTCTTCTTCTTTTTCACTCTCTCGTTCTTCCTCAAACACCACCAAACCAACCACCATTCACCTCTCCAAATCCCTCCATCTCCAAACTCCCATCCTCTTCCTCCTTCGCCCCCCAAACCCAAAACCGACACTTCCAATAATACCCCTCTTCCCCAAACTCACCATTCCCAACTCCCTTCTCCTTCTCTGCACCTCCCTCGCTCTCTCCTTCACTCTCCTCCTCTCCCCCGCCGACTCCGCCGCCGCCTTTGTTGTCACCTCCCCAAGGAAGCTCCAGTCCGATGAACTCGCCACCGTCCGCCTCTTCCAAGAGAACACTCCCTCCGTTGTCTACATAACCAACCTTGCTGTCAAGCAGGATGCGTTTACATTGGACGTGTTGGAGGTTCCTCAGGGGTCAGGATCTGGCTTTGTTTGGGATAAGGAGGGTCATATTGTGACCAATTATCACGTTATCCGTGGTGCCTCTGATCTCAAGGTCACTCTTGCTGACCAGTCAACTTACGATGCCAACGTTGTTGGTTTTGACCAAGACAAGGATGTTGCGGTGCTGCGTGTTGACGCACCTAAAGACAAGCTCAGGCCTATACCTATTGGGGTCTCTGCTGACCTGCTTGTTGGTCAGAAGGTTTATGCTATTGGGAACCCGTTTGGACTTGACCACACACTCACAACTGGTGTCATTAGTGGACTTCGGCGAGAAATTAGTTCTGCTGCAACTGGTCGTCCAATTCAAGATGTTATACAGACAGATGCAGCAATTAATCCTGGCAACAGTGGAGGGCCTCTCTTAGATAGTTCTGGAAACCTCATTGGGATAAATACAGCAATATATTCCCCATCTGGTGCATCCTCTGGTGTTGGATTTTCTATTCCAGTGGACACTGTAAATGGTATTGTTGACCAGTTGGTGAAGTTTGGGAAGGTTACAAGACCTATTTTAGGGATTAAGTTTGCCCCTGATCAGTCTGTGGAGCAGTTGGGAGTAAGTGGAGTGCTTGTCTTAGATGCTCCTGCCAATGGTCCTGCTGGGAAAGCAGGCTTGCAATCAACAAAGCGTGACTCTTATGGTAGACTCATTTTAGGTGACATCATAACATCTGTGAATGATAAGAAGGTTACTAATGGAAGTGATTTATACAGAATTCTTGACCAGTGTAAAGTGGGTGATAAGGTGATTGTGGAGGTGTTGAGAGGTGACCACAAGGAGAAGATACCCGTCATTCTGGAGCCAAAGCCTGATGAATCATGA

>Glyma19g01060.1   sequence type=predicted peptide   gene model=Glyma19g01060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATCSLISTLFPSPSSSSFSLSRSSSNTTKPTTIHLSKSLHLQTPILFLLRPPNPKPTLPIIPLFPKLTIPNSLLLLCTSLALSFTLLLSPADSAAAFVVTSPRKLQSDELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEVPQGSGSGFVWDKEGHIVTNYHVIRGASDLKVTLADQSTYDANVVGFDQDKDVAVLRVDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPANGPAGKAGLQSTKRDSYGRLILGDIITSVNDKKVTNGSDLYRILDQCKVGDKVIVEVLRGDHKEKIPVILEPKPDES*







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