Glyma19g01030 - SoyBase

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Report for Sequence Feature Glyma19g01030

Feature Type:	gene_model
Chromosome:	Gm19
Start:	731796
stop:	733211
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g01030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23710	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1645) \| chr1:8385363-8386250 FORWARD LENGTH=295	SoyBase	E_val: 3.00E-27	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009612	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07816	PFAM	Protein of unknown function (DUF1645)	JGI		ISS
UniRef100_I1N5Q0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5Q0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g01030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g01030

Paralog	Evidence	Comments
Glyma05g08610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g01030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g007600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g01030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g01030

Limit To All Plant Sequences

>Glyma19g01030.1   sequence type=CDS   gene model=Glyma19g01030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAAAGTAGAAGAGAGTGTGATGGAGTCGTTGGTGTGTCCAAGCTTCAGCGCCTATTCCTCCAACACGCTCGACGACATCGCGGATCAGGTCATTCGAAACGACGTGCGTTTCCAAGAAAACGACACCGACTTCGAATTCGTCGCGTTTCGCAAGGTCGCCGACGGAGTTTTTGTGGACAACAACGCCACTCCGGCGTTCCCGATCTTCGACCGCGACCTCGCCACCGCGGCGGAGGAGGACAGCGGAGAAGGAAAACGGCGAGCTTCCGGCGAGGAGGATGACGTGGCGGCGATTCAGATCACGCTCGGGAAGCTGCTGATGGACGATTCTTCAGCGTCGTGCTCGTCGTCCGAGGTGGAGGACGAGCTGGAGAATGTTCCGCCGGGGACGTACTGCGTGTGGACGCCGAGGAAGGCGTCGCCGGCGCCTGCGACGCCGTGCCGGAAGAGCAAATCGACGGGATCGTCGTCGTCGAAGCGCTGGAAGCTTCTGGATTTGCTGCGGCGGAGCAACAGCGAGGGGAAGGAGTCGGTGGTGTTCCTGACGCCATCGTCGGTGAATTCGGCGAAGAAGAAGGGAACGAAATCGGAGACAGGAAAAAAATCTCCGGCAAGTAGCGGCGGCGGCGAGAAGAGAATTGTGGCGGTTCCGGCGGTGTCGGCGCACGAAGCGCTTTATGTTCGGAACAGAGAAATGAGAAGAGAGGTTAAACGACGGTCGTATTTGCCGTATCGACAGGATTTGGTTGGTTTGTGTGTTAATCTCAACTCCATGGGCAAAGCATTCCCTCTTCATTTTTGA

Predicted protein sequences of Glyma19g01030

Limit To All Plant Sequences

>Glyma19g01030.1   sequence type=predicted peptide   gene model=Glyma19g01030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKVEESVMESLVCPSFSAYSSNTLDDIADQVIRNDVRFQENDTDFEFVAFRKVADGVFVDNNATPAFPIFDRDLATAAEEDSGEGKRRASGEEDDVAAIQITLGKLLMDDSSASCSSSEVEDELENVPPGTYCVWTPRKASPAPATPCRKSKSTGSSSSKRWKLLDLLRRSNSEGKESVVFLTPSSVNSAKKKGTKSETGKKSPASSGGGEKRIVAVPAVSAHEALYVRNREMRREVKRRSYLPYRQDLVGLCVNLNSMGKAFPLHF*

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