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Report for Sequence Feature Glyma19g00990

Feature Type:gene_model
Chromosome:Gm19
Start:654929
stop:655997
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g00990
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14700AT Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr5:4740502-4743327 REVERSE LENGTH=368 SoyBaseE_val: 5.00E-79ISS
GO:0009809GO-bp Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process SoyBaseN/AISS
GO:0044237GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metabolic process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016621GO-mf Annotation by Michelle Graham. GO Molecular Function: cinnamoyl-CoA reductase activity SoyBaseN/AISS
GO:0050662GO-mf Annotation by Michelle Graham. GO Molecular Function: coenzyme binding SoyBaseN/AISS
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI ISS
PTHR10366:SF9Panther NAD(P)H STEROID DEHYDROGENASE-RELATED JGI ISS
PF01370PFAM NAD dependent epimerase/dehydratase family JGI ISS
UniRef100_G3FJ91UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cinnamoyl-CoA reductase n=1 Tax=Betula platyphylla RepID=G3FJ91_BETPL SoyBaseE_val: 2.00E-99ISS
UniRef100_I1N5P4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N5P4_SOYBN SoyBaseE_val: 1.00E-156ISS

Expression Patterns of Glyma19g00990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00990 not represented in the dataset
Glyma19g00990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g00990 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g007200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g00990
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g00990
>Glyma19g00990.1   sequence type=CDS   gene model=Glyma19g00990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAGATTGAAGTAAGGGCTGCTGAGAATGTGATGGAAGCATGTGCAAGAACACCTTCCATAACAAGATGTGTGTTCACATCATCACTATCGGCTTGTGTGTGGCAAGACAATTCACAATCAGATTTTACCCCAGTTATTAATCATGCCTCTTGGAGCACCGAATCATTCTGCATAGAAAAGAAGCTTTGGTATGCTTTAGGAAAGATGAGAGCAGAGAAGGCTGCTTGGAGAATATCTAATGAAAGGGGTTTGAAGCTCACAACTATTTGTCCAGCTCTAATTACAGGTCCTGAATTTTGTCATAGGAATCCAACAGCAACGATTGCTTATCTCAAAGGTGCACAAGAAATGTACTCTCAAGGTTTTCTAGCATCAGTGGATGTGACCAAATTGGCTGAAGCTCATGCAAGTGTATTCAAGGCAATGAACAACGAGGCTTCTGGTAGATACATTTGCTTTGACCATGTAATTGATACACATAGTGAGGCAGAGAAGCTGGCAAAGGATATTGGGATGCCTAAGGAAAAGATATGTGGAGATGCATCAAACAATTCTTCTATACATAGATTTGAATTGTCCAATGAGAAGTTATGCAGAATCATGTCAAGGCCACTCAGGTGTTACAGTGAATATTAG
Predicted protein sequences of Glyma19g00990
>Glyma19g00990.1   sequence type=predicted peptide   gene model=Glyma19g00990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEIEVRAAENVMEACARTPSITRCVFTSSLSACVWQDNSQSDFTPVINHASWSTESFCIEKKLWYALGKMRAEKAAWRISNERGLKLTTICPALITGPEFCHRNPTATIAYLKGAQEMYSQGFLASVDVTKLAEAHASVFKAMNNEASGRYICFDHVIDTHSEAEKLAKDIGMPKEKICGDASNNSSIHRFELSNEKLCRIMSRPLRCYSEY*






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