Glyma19g00990 - SoyBase

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Report for Sequence Feature Glyma19g00990

Feature Type:	gene_model
Chromosome:	Gm19
Start:	654929
stop:	655997
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g00990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14700	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr5:4740502-4743327 REVERSE LENGTH=368	SoyBase	E_val: 5.00E-79	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cinnamoyl-CoA reductase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF9	Panther	NAD(P)H STEROID DEHYDROGENASE-RELATED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_G3FJ91	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cinnamoyl-CoA reductase n=1 Tax=Betula platyphylla RepID=G3FJ91_BETPL	SoyBase	E_val: 2.00E-99	ISS
UniRef100_I1N5P4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N5P4_SOYBN	SoyBase	E_val: 1.00E-156	ISS

Expression Patterns of Glyma19g00990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g00990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g007200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g00990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g00990

Limit To All Plant Sequences

>Glyma19g00990.1   sequence type=CDS   gene model=Glyma19g00990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAGATTGAAGTAAGGGCTGCTGAGAATGTGATGGAAGCATGTGCAAGAACACCTTCCATAACAAGATGTGTGTTCACATCATCACTATCGGCTTGTGTGTGGCAAGACAATTCACAATCAGATTTTACCCCAGTTATTAATCATGCCTCTTGGAGCACCGAATCATTCTGCATAGAAAAGAAGCTTTGGTATGCTTTAGGAAAGATGAGAGCAGAGAAGGCTGCTTGGAGAATATCTAATGAAAGGGGTTTGAAGCTCACAACTATTTGTCCAGCTCTAATTACAGGTCCTGAATTTTGTCATAGGAATCCAACAGCAACGATTGCTTATCTCAAAGGTGCACAAGAAATGTACTCTCAAGGTTTTCTAGCATCAGTGGATGTGACCAAATTGGCTGAAGCTCATGCAAGTGTATTCAAGGCAATGAACAACGAGGCTTCTGGTAGATACATTTGCTTTGACCATGTAATTGATACACATAGTGAGGCAGAGAAGCTGGCAAAGGATATTGGGATGCCTAAGGAAAAGATATGTGGAGATGCATCAAACAATTCTTCTATACATAGATTTGAATTGTCCAATGAGAAGTTATGCAGAATCATGTCAAGGCCACTCAGGTGTTACAGTGAATATTAG

Predicted protein sequences of Glyma19g00990

Limit To All Plant Sequences

>Glyma19g00990.1   sequence type=predicted peptide   gene model=Glyma19g00990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEIEVRAAENVMEACARTPSITRCVFTSSLSACVWQDNSQSDFTPVINHASWSTESFCIEKKLWYALGKMRAEKAAWRISNERGLKLTTICPALITGPEFCHRNPTATIAYLKGAQEMYSQGFLASVDVTKLAEAHASVFKAMNNEASGRYICFDHVIDTHSEAEKLAKDIGMPKEKICGDASNNSSIHRFELSNEKLCRIMSRPLRCYSEY*

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