Report for Sequence Feature Glyma19g00980
Feature Type: gene_model
Chromosome: Gm19
Start: 646556
stop: 652454
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g00980
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G14700 AT
Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr5:4740502-4743327 REVERSE LENGTH=368
SoyBase E_val: 2.00E-127 ISS
GO:0009809 GO-bp
Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process
SoyBase N/A ISS
GO:0044237 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular metabolic process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0016621 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cinnamoyl-CoA reductase activity
SoyBase N/A ISS
GO:0050662 GO-mf
Annotation by Michelle Graham. GO Molecular Function: coenzyme binding
SoyBase N/A ISS
KOG1502
KOG
Flavonol reductase/cinnamoyl-CoA reductase
JGI ISS
PTHR10366 Panther
NAD DEPENDENT EPIMERASE/DEHYDRATASE
JGI ISS
PTHR10366:SF9 Panther
NAD(P)H STEROID DEHYDROGENASE-RELATED
JGI ISS
PF01073 PFAM
3-beta hydroxysteroid dehydrogenase/isomerase family
JGI ISS
UniRef100_G3FJ91 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cinnamoyl-CoA reductase n=1 Tax=Betula platyphylla RepID=G3FJ91_BETPL
SoyBase E_val: 8.00E-164 ISS
UniRef100_I1N5P4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N5P4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g00980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g00980
Paralog Evidence Comments
Glyma05g08650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g00980 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g006900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g00980
Coding sequences of Glyma19g00980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g00980.1 sequence type=CDS gene model=Glyma19g00980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGTTGTACGGACGTGGGAGAGCAGGAGGGCGGAGCTGGAGGCCTTTCGCCGGAGCCTGGTGGCAGCCGCCGGCATCCAGCGGCGGAAAGACGATGAGGGGGGGAGAACCCACAAGTTTGTTTCCTCCTATGAACATGATGATGGAAAGGGTACCTTAATCTGTGTCACTTGTGGAGTTTCCTACTTTGGTCTTGCCTTGGTCAACCATCTCTTGCTCTTAGGTTACTCTCTTCGAGTCACCGTTGACAACCCAGAGGACATAGAGAAGCTGAGGGAAATGGAGAGGCGTGGTGAAGTGAGGGCTACAGAAGGAAATTTGGAAGTAATAATGGCAAAGCTAACTGATGTTGATGGGTTGGAGAAAGCATTTCAGGGCTGTCGTGGCGTCTTTCACACTTCTGCATTTACAGACCCCGCTGGTTTATCTGGCTACACAAAATCCATGGCCGAGATTGAAGTAAGGGCTGCTGAGAATGTGATGGAAGCATGTGCAAGAACACCTTCCATAACAAGATGTGTGTTCACATCATCACTATCGGCTTGTGTGTGGCAAGACAATTCACAATCAGATTTTACCCCAGTTATTAATCATGCCTCTTGGAGCACCGAATCATTCTGCATAGAAAAGAAGCTTTGGTATGCTTTAGGAAAGATGAGAGCAGAGAAGGCTGCTTGGAGAATATCTAATGAAAGGGGTTTGAAGCTCACAACTATTTGTCCAGCTCTAATTACAGGTCCTGAATTTTGTCATAGGAATCCAACAGCAACGATTGCTTATCTCAAAGGTGCACAAGAAATGTACTCTCAAGGTTTTCTAGCATCAGTGGATGTGACCAAATTGGCTGAAGCTCATGCAAGTGTATTCAAGGCAATGAACAACGAGGCTTCTGGTAGATACATTTGCTTTGACCATGTAATTGATACACATAGTGAGGCAGAGAAGCTGGCAAAGGATATTGGGATGCCTAAGGAAAAGATATGTGGAGATGCATCAAACAATTCTTCTATACATAGATTTGAATTGTCCAATGAGAAGTTATGCAGAATCATGTCAAGGCCACTCAGGTGTTACAGTGAATATTAG
Predicted protein sequences of Glyma19g00980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g00980.1 sequence type=predicted peptide gene model=Glyma19g00980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGVVRTWESRRAELEAFRRSLVAAAGIQRRKDDEGGRTHKFVSSYEHDDGKGTLICVTCGVSYFGLALVNHLLLLGYSLRVTVDNPEDIEKLREMERRGEVRATEGNLEVIMAKLTDVDGLEKAFQGCRGVFHTSAFTDPAGLSGYTKSMAEIEVRAAENVMEACARTPSITRCVFTSSLSACVWQDNSQSDFTPVINHASWSTESFCIEKKLWYALGKMRAEKAAWRISNERGLKLTTICPALITGPEFCHRNPTATIAYLKGAQEMYSQGFLASVDVTKLAEAHASVFKAMNNEASGRYICFDHVIDTHSEAEKLAKDIGMPKEKICGDASNNSSIHRFELSNEKLCRIMSRPLRCYSEY*