Report for Sequence Feature Glyma19g00970
Feature Type: gene_model
Chromosome: Gm19
Start: 636444
stop: 643417
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g00970
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G01516 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14690.1); Has 67 Blast hits to 67 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:207426-207989 FORWARD LENGTH=187
SoyBase E_val: 3.00E-22 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1N5P3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5P3_SOYBN
SoyBase E_val: 2.00E-109 ISS
Expression Patterns of Glyma19g00970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g00970
Paralog Evidence Comments
Glyma05g08660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g00970 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g006800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g00970
Coding sequences of Glyma19g00970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g00970.1 sequence type=CDS gene model=Glyma19g00970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAGTATACATTGAGAATAATGAAGAAGAAGAAGAAGCATCAGAGTGAGGAGAAGAATCCACGTGGCAGGTTGGCGAAGGAGGAGGAGGGTGGCGAGGAAAAGATAAAGTGCTCGAGCAAGCATTGTGGTTCATGCTGCGGCGGCTACGTGGCTGATTGCGTGGCAGTGTGTTGCTGCCCTTGCGCGGTGTTGCATTGTTGTGCTATGGCTATTGTCAAGGGGCCTTCTCTTGTGGGGAGAAAGTGTTTAGGGTTGGGAAAGAACAAGAACAAGAACAACAACATTAAAAGGGTTCAAGAGGGGTGTGAAGATGATGTTGATGTTGATGTTGTTGTTGAGAGGAACAACAGCAACATTGAAAGGGTTCAAAGGGGTGTGAGGGAAATTGACAGTGTCATTGTCAATGCTGGATTTGATGCAGAGAAGGTTTGGAAGGAACTCTATCAGATTGGTCATATGGATTTTGGGAGGGTTTCTAGTTCCTCACATGATGATTAA
Predicted protein sequences of Glyma19g00970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g00970.1 sequence type=predicted peptide gene model=Glyma19g00970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQYTLRIMKKKKKHQSEEKNPRGRLAKEEEGGEEKIKCSSKHCGSCCGGYVADCVAVCCCPCAVLHCCAMAIVKGPSLVGRKCLGLGKNKNKNNNIKRVQEGCEDDVDVDVVVERNNSNIERVQRGVREIDSVIVNAGFDAEKVWKELYQIGHMDFGRVSSSSHDD*