|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G08410 | AT | Annotation by Michelle Graham. TAIR10: ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 | chr5:2709974-2710528 REVERSE LENGTH=184 | SoyBase | E_val: 2.00E-33 | ISS |
GO:0009107 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipoate biosynthetic process | SoyBase | N/A | ISS |
GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
GO:0008937 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ferredoxin-NAD(P) reductase activity | SoyBase | N/A | ISS |
GO:0016992 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipoate synthase activity | SoyBase | N/A | ISS |
GO:0030385 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ferredoxin:thioredoxin reductase activity | SoyBase | N/A | ISS |
GO:0051539 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding | SoyBase | N/A | ISS |
PTHR10949 | Panther | LIPOIC ACID SYNTHETASE | JGI | ISS | |
PTHR10949:SF1 | Panther | LIPOIC ACID SYNTHETASE | JGI | ISS | |
PF02941 | PFAM | Ferredoxin thioredoxin reductase variable alpha chain | JGI | ISS | |
UniRef100_B9RGK8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lipoic acid synthetase, putative n=1 Tax=Ricinus communis RepID=B9RGK8_RICCO | SoyBase | E_val: 3.00E-40 | ISS |
UniRef100_C6SX79 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SX79_SOYBN | SoyBase | E_val: 9.00E-109 | ISS |
Glyma19g00910 not represented in the dataset |
Glyma19g00910 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.19g000200 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g00910.3 sequence type=transcript gene model=Glyma19g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGAAACCAACGAATATATCCAATTAGAATTAGAATATAAGATAGTAGAAAAGAAAGGGAATAAGGAAACCCTTCTTCACTTCTACCTCTAATCTAGGAATAGGAAAAAGATGGGCAGCACTAGTGCGAGTGCCCTCAGGCTATCGTCGATGGTCAGCGTGTCCCCGAATTGCAATTGCTCATCGATGACGCTTATGAAGAAGACGGCGATGGCGATGGCGATGGCTCCTTTTTCACTTGCAATGAAAATCAAAAGCAAAAGGGGTGGTATTAGGTGCGAGGTGGCTATTAATGCGGTGGATGAGGAGTCGAGGACGTCACCGGAGGAGACGAAGATCGGAGCGCGTGTGAAGGTGAAGGAGGCGGGTTTGAAGGTGTACCACGTCCCCAAAGTTGGGGAGCTTGACCTAACGGGTCTGGAAGGCGAGATCAAGCAGTACGTTGGCCTCTGGAACGGTAAGCGAATCTCCGCCAATCTTCCTTACAAGGTTCAGTTTCTCACCGACATCCCCGGTCGTGGTCCTGTCAAGTTCTTTGCCCACCTCAAGGAAGATGAATTCGACTATCTTTAGTCACTGTACTGCACTGCACTGCCCTGCACGTCACTGTTGTTTCACTTCTTTCAAGTTTTAACACTTCCATTTTCTCATTAATTAGATGATGATTTGAAGAAGGTGTAGCCTGAATCCTTTCTAATATTTTTTAGTAGGTGTCCCTGTACTTGTTGGTAAAAGCAATGGTATCCTTCGGCAAATCTGTCTTTTGAACCTACTATGATTTTACTGACCTCGAAAACTCAACTCAACAATGATGTTTTGTGCACTTTCATGGTTATTAGTCTCTACAAACTGGAAAGAGGCAAATATTGATATTTTGCTTGGTTCTATTATTGTCTAGTTACTACGTAGTAGTAATTCACTTTTAACGTTCCAACTTGTGGTTTTTAAATTTCATATCTGTTGTTCTGTGTTAGCATTATATGGTCTGGTATGTAACCAAAAAGTTGTATAATTAATGGGAGATACCTCGTACTCAACATACACTTATA >Glyma19g00910.4 sequence type=transcript gene model=Glyma19g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGAAACCAACGAATATATCCAATTAGAATTAGAATATAAGATAGTAGAAAAGAAAGGGAATAAGGAAACCCTTCTTCACTTCTACCTCTAATCTAGGAATAGGAAAAAGATGGGCAGCACTAGTGCGAGTGCCCTCAGGCTATCGTCGATGGTCAGCGTGTCCCCGAATTGCAATTGCTCATCGATGACGCTTATGAAGAAGACGGCGATGGCGATGGCGATGGCTCCTTTTTCACTTGCAATGAAAATCAAAAGCAAAAGGGGTGGTATTAGGTGCGAGGTGGCTATTAATGCGGTGGATGAGGAGTCGAGGACGTCACCGGAGGAGACGAAGATCGGAGCGCGTGTGAAGGTGAAGGAGGCGGGTTTGAAGGTGTACCACGTCCCCAAAGTTGGGGAGCTTGACCTAACGGGTCTGGAAGGCGAGATCAAGCAGTACGTTGGCCTCTGGAACGGTAAGCGAATCTCCGCCAATCTTCCTTACAAGGTTCAGTTTCTCACCGACATCCCCGGTCGTGGTCCTGTCAAGTTCTTTGCCCACCTCAAGGAAGATGAATTCGACTATCTTTAGTCACTGTACTGCACTGCACTGCCCTGCACGTCACTGTTGTTGTATGTAATCAATTTTAATCCCCCTGAATTTTTTACTTATGTATTACCTTCTGTTTCAAGCCGATAGATGCCTACTAAATGAATGATATGAATTCATCTTATGCAGTCACTTCTTTCAAGTTTTAACACTTCCATTTTCTCATTAATTAGATGATGATTTGAAGAAGGTGTAGCCTGAATCCTTTCTAATATTTTTTAGTAGGTGTCCCTGTACTTGTTGGTAAAAGCAATGGTATCCTTCGGCAAATCTGTCTTTTGAACC >Glyma19g00910.5 sequence type=transcript gene model=Glyma19g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGAAACCAACGAATATATCCAATTAGAATTAGAATATAAGATAGTAGAAAAGAAAGGGAATAAGGAAACCCTTCTTCACTTCTACCTCTAATCTAGGAATAGGAAAAAGATGGGCAGCACTAGTGCGAGTGCCCTCAGGCTATCGTCGATGGTCAGCGTGTCCCCGAATTGCAATTGCTCATCGATGACGCTTATGAAGAAGACGGCGATGGCGATGGCGATGGCTCCTTTTTCACTTGCAATGAAAATCAAAAGCAAAAGGGGTGGTATTAGGTGCGAGGTGGCTATTAATGCGGTGGATGAGGAGTCGAGGACGTCACCGGAGGAGACGAAGATCGGAGCGCGTGTGAAGGTGAAGGAGGCGGGTTTGAAGGTGTACCACGTCCCCAAAGTTGGGGAGCTTGACCTAACGGGTCTGGAAGGCGAGATCAAGCAGTACGTTGGCCTCTGGAACGGTAAGCGAATCTCCGCCAATCTTCCTTACAAGGTTCAGTTTCTCACCGACATCCCCGGTCGTGGTCCTGTCAAGTTCTTTGCCCACCTCAAGGAAGATGAATTCGACTATCTTTAGTCACTGTACTGCACTGCACTGCCCTGCACGTCACTGTTGTTATGATGATTTGAAGAAGGTGTAGCCTGAATCCTTTCTAATATTTTTTAGTAGGTGTCCCTGTACTTGTTGGTAAAAGCAATGGTATCCTTCGGCAAATCTGTCTTTTGAACCTACTATGATTTTACTGACCTCGAAAACTCAACTCAACAATGATGTTTTGTGCACTTTCATGGTTATTAGTCTCTACAAACTGGAAAGAGGCAAATATTGATATTTTGCTTGGTTCTATTATTGTCTAGTTACTACGTAGTAGTAATTCACTTTTAACGTTCCAACTTGTGGTTTTTAAATTTCATATCTGTTGTTCTGTGTTAGCATTATATGGTCTGGTATGTAACCAAAAAGTTGTATAATTAATGGGAGATACCTCGTACTCAACATACACTTATA
>Glyma19g00910.2 sequence type=CDS gene model=Glyma19g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGCACTAGTGCGAGTGCCCTCAGGCTATCGTCGATGGTCAGCGTGTCCCCGAATTGCAATTGCTCATCGATGACGCTTATGAAGAAGACGGCGATGGCGATGGCGATGGCTCCTTTTTCACTTGCAATGAAAATCAAAAGCAAAAGGGGTGGTATTAGGTGCGAGGTGGCTATTAATGCGGTGGATGAGGAGTCGAGGACGTCACCGGAGGAGACGAAGATCGGAGCGCGTGTGAAGGTGAAGGAGGCGGGTTTGAAGGTGTACCACGTCCCCAAAGTTGGGGAGCTTGACCTAACGGGTCTGGAAGGCGAGATCAAGCAGTACGTTGGCCTCTGGAACGGTAAGCGAATCTCCGCCAATCTTCCTTACAAGGTTCAGTTTCTCACCGACATCCCCGGTCGTGGTCCTGTCAAGTTCTTTGCCCACCTCAAGGAAGATGAATTCGACTATCTTTAG >Glyma19g00910.3 sequence type=CDS gene model=Glyma19g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGCACTAGTGCGAGTGCCCTCAGGCTATCGTCGATGGTCAGCGTGTCCCCGAATTGCAATTGCTCATCGATGACGCTTATGAAGAAGACGGCGATGGCGATGGCGATGGCTCCTTTTTCACTTGCAATGAAAATCAAAAGCAAAAGGGGTGGTATTAGGTGCGAGGTGGCTATTAATGCGGTGGATGAGGAGTCGAGGACGTCACCGGAGGAGACGAAGATCGGAGCGCGTGTGAAGGTGAAGGAGGCGGGTTTGAAGGTGTACCACGTCCCCAAAGTTGGGGAGCTTGACCTAACGGGTCTGGAAGGCGAGATCAAGCAGTACGTTGGCCTCTGGAACGGTAAGCGAATCTCCGCCAATCTTCCTTACAAGGTTCAGTTTCTCACCGACATCCCCGGTCGTGGTCCTGTCAAGTTCTTTGCCCACCTCAAGGAAGATGAATTCGACTATCTTTAG >Glyma19g00910.4 sequence type=CDS gene model=Glyma19g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGCACTAGTGCGAGTGCCCTCAGGCTATCGTCGATGGTCAGCGTGTCCCCGAATTGCAATTGCTCATCGATGACGCTTATGAAGAAGACGGCGATGGCGATGGCGATGGCTCCTTTTTCACTTGCAATGAAAATCAAAAGCAAAAGGGGTGGTATTAGGTGCGAGGTGGCTATTAATGCGGTGGATGAGGAGTCGAGGACGTCACCGGAGGAGACGAAGATCGGAGCGCGTGTGAAGGTGAAGGAGGCGGGTTTGAAGGTGTACCACGTCCCCAAAGTTGGGGAGCTTGACCTAACGGGTCTGGAAGGCGAGATCAAGCAGTACGTTGGCCTCTGGAACGGTAAGCGAATCTCCGCCAATCTTCCTTACAAGGTTCAGTTTCTCACCGACATCCCCGGTCGTGGTCCTGTCAAGTTCTTTGCCCACCTCAAGGAAGATGAATTCGACTATCTTTAG >Glyma19g00910.5 sequence type=CDS gene model=Glyma19g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGCACTAGTGCGAGTGCCCTCAGGCTATCGTCGATGGTCAGCGTGTCCCCGAATTGCAATTGCTCATCGATGACGCTTATGAAGAAGACGGCGATGGCGATGGCGATGGCTCCTTTTTCACTTGCAATGAAAATCAAAAGCAAAAGGGGTGGTATTAGGTGCGAGGTGGCTATTAATGCGGTGGATGAGGAGTCGAGGACGTCACCGGAGGAGACGAAGATCGGAGCGCGTGTGAAGGTGAAGGAGGCGGGTTTGAAGGTGTACCACGTCCCCAAAGTTGGGGAGCTTGACCTAACGGGTCTGGAAGGCGAGATCAAGCAGTACGTTGGCCTCTGGAACGGTAAGCGAATCTCCGCCAATCTTCCTTACAAGGTTCAGTTTCTCACCGACATCCCCGGTCGTGGTCCTGTCAAGTTCTTTGCCCACCTCAAGGAAGATGAATTCGACTATCTTTAG
>Glyma19g00910.2 sequence type=predicted peptide gene model=Glyma19g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSTSASALRLSSMVSVSPNCNCSSMTLMKKTAMAMAMAPFSLAMKIKSKRGGIRCEVAINAVDEESRTSPEETKIGARVKVKEAGLKVYHVPKVGELDLTGLEGEIKQYVGLWNGKRISANLPYKVQFLTDIPGRGPVKFFAHLKEDEFDYL* >Glyma19g00910.3 sequence type=predicted peptide gene model=Glyma19g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSTSASALRLSSMVSVSPNCNCSSMTLMKKTAMAMAMAPFSLAMKIKSKRGGIRCEVAINAVDEESRTSPEETKIGARVKVKEAGLKVYHVPKVGELDLTGLEGEIKQYVGLWNGKRISANLPYKVQFLTDIPGRGPVKFFAHLKEDEFDYL* >Glyma19g00910.4 sequence type=predicted peptide gene model=Glyma19g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSTSASALRLSSMVSVSPNCNCSSMTLMKKTAMAMAMAPFSLAMKIKSKRGGIRCEVAINAVDEESRTSPEETKIGARVKVKEAGLKVYHVPKVGELDLTGLEGEIKQYVGLWNGKRISANLPYKVQFLTDIPGRGPVKFFAHLKEDEFDYL* >Glyma19g00910.5 sequence type=predicted peptide gene model=Glyma19g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSTSASALRLSSMVSVSPNCNCSSMTLMKKTAMAMAMAPFSLAMKIKSKRGGIRCEVAINAVDEESRTSPEETKIGARVKVKEAGLKVYHVPKVGELDLTGLEGEIKQYVGLWNGKRISANLPYKVQFLTDIPGRGPVKFFAHLKEDEFDYL*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||