Glyma19g00900 - SoyBase

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Report for Sequence Feature Glyma19g00900

Feature Type:	gene_model
Chromosome:	Gm19
Start:	572938
stop:	580817
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g00900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23450	AT	Annotation by Michelle Graham. TAIR10: long-chain base (LCB) kinase 1 \| chr5:7905041-7908960 REVERSE LENGTH=763	SoyBase	E_val: 0	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0007205	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0030148	GO-bp	Annotation by Michelle Graham. GO Biological Process: sphingolipid biosynthetic process	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004143	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity	SoyBase	N/A	ISS
GO:0017050	GO-mf	Annotation by Michelle Graham. GO Molecular Function: D-erythro-sphingosine kinase activity	SoyBase	N/A	ISS
KOG1116	KOG	Sphingosine kinase, involved in sphingolipid metabolism	JGI		ISS
PTHR12358	Panther	SPHINGOSINE KINASE	JGI		ISS
PTHR12358:SF5	Panther	SPHINGOSINE KINASE 1	JGI		ISS
PF00781	PFAM	Diacylglycerol kinase catalytic domain	JGI		ISS
UniRef100_I1N5N4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5N4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5KR50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sphingosine kinase n=1 Tax=Lotus japonicus RepID=Q5KR50_LOTJA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g00900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g00900

Paralog	Evidence	Comments
Glyma05g09400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g00900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g000300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g00900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g00900

Limit To All Plant Sequences

>Glyma19g00900.1   sequence type=CDS   gene model=Glyma19g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGATATGCACCGGAATTCTACTGGTAGTACTAACACTAATAAGATATCATCATCGGCAATAAGGCTGCCCTCACCTCAACAATCTCTAAGACGCTTGGGATTGTGTTCCCAGATAGCTACGGGGGAGCACTCTTCTCCTATCGTCTTCCCTGAAAAACGTGGCAAAGTCAAGGCGACTTCCAGGAAGACCAGTGTCCCCCCCACTACCATTCGTCCAGATGATCAGGACATAACCAAGAATTTTGAGCATAGGATTGACATTGCAGGGGCTGGAGGAGGAGGAGGAGATGAGAAGTCTGATTTGTTAGGATATGTCGTATTCTCTGGAAAACTCATTTTGGATAAGAGAAAACTTGCTACAATAAATAATGCTGCTGCTGATGCTCAACAATCTTCTTCTGATATAACCAACCAAAATGCTGTAGATGCCAAACTAACAAGCAAGGCCTTGGCTTGGGGATCCCATGTGCTGCATCTTTATGATGTTATCTCGGTTTCTTATAATGCTGGTCTCAGACATTTCACAGTGCACTCCTACCCATTGAAAGAAGCTTCATGTGGGCTTTCTTGCTTTATAAAATCTCGACGAAGTCGCAAGGACTTCCGCTTTGTTGCTTCTAGCATAGAAGAAGCACTTCAATGGGTTGGTGGATTTGCAGATCAACACTGTTTCGTGAATTGTCTTCCTCACCCTTTACTGTCTTCGAAGAAGCAAGCGTCCTCAGAATTACTTCATACAGATACCCCTCCTGAATTGCTCTTTAGATGTAAAACTCCACCTAAGATGCTTGTGATTTTAAACCCACGATCAGGTCGGGGTCGTTCAAGTAAAGTTTTCCATGGCATTGTGGAACCCATATTTAAGCTTGCTGGGTTTAGATTGGAGGTAGTCAAAACAACATCTGCTGGTCATGCTAGAAATCTTGCATCAAGTGTAGACATCAGCACTTGCCCTGATGGAATTATCTGTGTTGGTGGTGATGGGATAATCAATGAGGTTCTTAATGGTCTCCTTAGTAGAGACAATCAAAAGGAAGGAATATCTATACCAATTGGAATTATACCGGCTGGTTCTGATAACTCACTGGTATGGACTGTTCTTGGAGTTAGAGATCCAGTTTCTGCAGCCATGGCTATTGTAAAGGGGGGTCTTACTGCTACAGATGTCTTTGCTGTTGAATGGATTCAGACCAATAAAATTCACTACGGATTAACTGTCTCATATTATGGTTTTCTTAGTGATGTGTTGGAACTTTCTGAAAAATATCAGAAGCGCTTTGGCCCGCTGCGGTATTTTGTTGCTGGATTCTTCAAGTTCCTGTGCTTACCACACTACAGCTATGAAGTTGAATATCTTCCAGCTTCAAAGACTGAGGGAGAAGGAAAGCTTTCAGGTGAAAAGGAAGTAGTTGACATGTCAGATCTGTACACTGACATCATGAGCAGATCAAATAAGGATGGAATGCCCAGAGCATCTAGTCTTTCAAGTATTGACTCGATAATGACTCCTAGTCGTATATCTGGTGGAGACCTGGATACCTGTAGTAGCACCCATGCTAGCACTGAACCTTCTGAATTGGTGCGTGGCTTAGATCCAAAGTCCAAGCGCCTATCGTCTGGAAGGGGCAATGTAACAGCAGAGCCAGAAGTTATCCATCCGCAGCTGCCTCTGTCAACAACTCCCAACTGGCCAAGAACCAGATCTAAGTCAAGGAATGATAAAGGATGGACTGGATTGACCACAACACATGATACCTCTAGATGGGGAAATACTGCGACAAATGATAGAGAGGATATATCATCAACACTGTCTGATCCAGGTCCTATATGGGATGCTGAACCAAAATGGGATGCCGAACCTAATAATTGGGATGTAGAAAATCCAATTGAGTTGCCGGGACCATCAGATGATACAGAAATAGGATCTGCAAAGGAGGTTGTGCCCCATTTTGGAGATAAATGGGTTGTGTCAAAGGGACAATTTCTTGGCATTCTGGTTTGCAACCACGCATGTAGAACTGTTCAGAGTTCTCAGGTGGTTGCTCCCAAAGCTGAGCACGATGATAACACTCTAGATTTGCTCTTGGTTCATGGGAGTGGAAGGCTGAGGCTGTTGAGATTTTTCTTACTTCTACAAATGGGTCGACATCTTTCACTGCCATATGTTGAATATGTCAAGGTAAAGTCTGTGAGGATAAAGCCTGGGAAGCACACTCACAGTGGATGTGGTATTGATGGTGAGCTTTTCCCACTCAATGGACAAGTAATTTCTTCTTTGCTTCCAGAACAGTGCAGGCTTGTTGGTCGCTTTCGTATATGA

Predicted protein sequences of Glyma19g00900

Limit To All Plant Sequences

>Glyma19g00900.1   sequence type=predicted peptide   gene model=Glyma19g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDMHRNSTGSTNTNKISSSAIRLPSPQQSLRRLGLCSQIATGEHSSPIVFPEKRGKVKATSRKTSVPPTTIRPDDQDITKNFEHRIDIAGAGGGGGDEKSDLLGYVVFSGKLILDKRKLATINNAAADAQQSSSDITNQNAVDAKLTSKALAWGSHVLHLYDVISVSYNAGLRHFTVHSYPLKEASCGLSCFIKSRRSRKDFRFVASSIEEALQWVGGFADQHCFVNCLPHPLLSSKKQASSELLHTDTPPELLFRCKTPPKMLVILNPRSGRGRSSKVFHGIVEPIFKLAGFRLEVVKTTSAGHARNLASSVDISTCPDGIICVGGDGIINEVLNGLLSRDNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAAMAIVKGGLTATDVFAVEWIQTNKIHYGLTVSYYGFLSDVLELSEKYQKRFGPLRYFVAGFFKFLCLPHYSYEVEYLPASKTEGEGKLSGEKEVVDMSDLYTDIMSRSNKDGMPRASSLSSIDSIMTPSRISGGDLDTCSSTHASTEPSELVRGLDPKSKRLSSGRGNVTAEPEVIHPQLPLSTTPNWPRTRSKSRNDKGWTGLTTTHDTSRWGNTATNDREDISSTLSDPGPIWDAEPKWDAEPNNWDVENPIELPGPSDDTEIGSAKEVVPHFGDKWVVSKGQFLGILVCNHACRTVQSSQVVAPKAEHDDNTLDLLLVHGSGRLRLLRFFLLLQMGRHLSLPYVEYVKVKSVRIKPGKHTHSGCGIDGELFPLNGQVISSLLPEQCRLVGRFRI*

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