Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma19g00900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma19g00900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma19g00900
Feature Type: gene_model
Chromosome: Gm19
Start: 572938
stop: 580817
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g00900
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G23450 AT
Annotation by Michelle Graham. TAIR10: long-chain base (LCB) kinase 1 | chr5:7905041-7908960 REVERSE LENGTH=763
SoyBase E_val: 0 ISS
GO:0006486 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein glycosylation
SoyBase N/A ISS
GO:0007205 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway
SoyBase N/A ISS
GO:0009630 GO-bp
Annotation by Michelle Graham. GO Biological Process: gravitropism
SoyBase N/A ISS
GO:0009832 GO-bp
Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis
SoyBase N/A ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0010413 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process
SoyBase N/A ISS
GO:0016926 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein desumoylation
SoyBase N/A ISS
GO:0030148 GO-bp
Annotation by Michelle Graham. GO Biological Process: sphingolipid biosynthetic process
SoyBase N/A ISS
GO:0042546 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis
SoyBase N/A ISS
GO:0044036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process
SoyBase N/A ISS
GO:0045492 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process
SoyBase N/A ISS
GO:0050665 GO-bp
Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004143 GO-mf
Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity
SoyBase N/A ISS
GO:0017050 GO-mf
Annotation by Michelle Graham. GO Molecular Function: D-erythro-sphingosine kinase activity
SoyBase N/A ISS
KOG1116
KOG
Sphingosine kinase, involved in sphingolipid metabolism
JGI ISS
PTHR12358 Panther
SPHINGOSINE KINASE
JGI ISS
PTHR12358:SF5 Panther
SPHINGOSINE KINASE 1
JGI ISS
PF00781 PFAM
Diacylglycerol kinase catalytic domain
JGI ISS
UniRef100_I1N5N4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5N4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q5KR50 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Sphingosine kinase n=1 Tax=Lotus japonicus RepID=Q5KR50_LOTJA
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g00900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g00900
Paralog Evidence Comments
Glyma05g09400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g00900 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g000300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g00900
Coding sequences of Glyma19g00900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g00900.1 sequence type=CDS gene model=Glyma19g00900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGAGATATGCACCGGAATTCTACTGGTAGTACTAACACTAATAAGATATCATCATCGGCAATAAGGCTGCCCTCACCTCAACAATCTCTAAGACGCTTGGGATTGTGTTCCCAGATAGCTACGGGGGAGCACTCTTCTCCTATCGTCTTCCCTGAAAAACGTGGCAAAGTCAAGGCGACTTCCAGGAAGACCAGTGTCCCCCCCACTACCATTCGTCCAGATGATCAGGACATAACCAAGAATTTTGAGCATAGGATTGACATTGCAGGGGCTGGAGGAGGAGGAGGAGATGAGAAGTCTGATTTGTTAGGATATGTCGTATTCTCTGGAAAACTCATTTTGGATAAGAGAAAACTTGCTACAATAAATAATGCTGCTGCTGATGCTCAACAATCTTCTTCTGATATAACCAACCAAAATGCTGTAGATGCCAAACTAACAAGCAAGGCCTTGGCTTGGGGATCCCATGTGCTGCATCTTTATGATGTTATCTCGGTTTCTTATAATGCTGGTCTCAGACATTTCACAGTGCACTCCTACCCATTGAAAGAAGCTTCATGTGGGCTTTCTTGCTTTATAAAATCTCGACGAAGTCGCAAGGACTTCCGCTTTGTTGCTTCTAGCATAGAAGAAGCACTTCAATGGGTTGGTGGATTTGCAGATCAACACTGTTTCGTGAATTGTCTTCCTCACCCTTTACTGTCTTCGAAGAAGCAAGCGTCCTCAGAATTACTTCATACAGATACCCCTCCTGAATTGCTCTTTAGATGTAAAACTCCACCTAAGATGCTTGTGATTTTAAACCCACGATCAGGTCGGGGTCGTTCAAGTAAAGTTTTCCATGGCATTGTGGAACCCATATTTAAGCTTGCTGGGTTTAGATTGGAGGTAGTCAAAACAACATCTGCTGGTCATGCTAGAAATCTTGCATCAAGTGTAGACATCAGCACTTGCCCTGATGGAATTATCTGTGTTGGTGGTGATGGGATAATCAATGAGGTTCTTAATGGTCTCCTTAGTAGAGACAATCAAAAGGAAGGAATATCTATACCAATTGGAATTATACCGGCTGGTTCTGATAACTCACTGGTATGGACTGTTCTTGGAGTTAGAGATCCAGTTTCTGCAGCCATGGCTATTGTAAAGGGGGGTCTTACTGCTACAGATGTCTTTGCTGTTGAATGGATTCAGACCAATAAAATTCACTACGGATTAACTGTCTCATATTATGGTTTTCTTAGTGATGTGTTGGAACTTTCTGAAAAATATCAGAAGCGCTTTGGCCCGCTGCGGTATTTTGTTGCTGGATTCTTCAAGTTCCTGTGCTTACCACACTACAGCTATGAAGTTGAATATCTTCCAGCTTCAAAGACTGAGGGAGAAGGAAAGCTTTCAGGTGAAAAGGAAGTAGTTGACATGTCAGATCTGTACACTGACATCATGAGCAGATCAAATAAGGATGGAATGCCCAGAGCATCTAGTCTTTCAAGTATTGACTCGATAATGACTCCTAGTCGTATATCTGGTGGAGACCTGGATACCTGTAGTAGCACCCATGCTAGCACTGAACCTTCTGAATTGGTGCGTGGCTTAGATCCAAAGTCCAAGCGCCTATCGTCTGGAAGGGGCAATGTAACAGCAGAGCCAGAAGTTATCCATCCGCAGCTGCCTCTGTCAACAACTCCCAACTGGCCAAGAACCAGATCTAAGTCAAGGAATGATAAAGGATGGACTGGATTGACCACAACACATGATACCTCTAGATGGGGAAATACTGCGACAAATGATAGAGAGGATATATCATCAACACTGTCTGATCCAGGTCCTATATGGGATGCTGAACCAAAATGGGATGCCGAACCTAATAATTGGGATGTAGAAAATCCAATTGAGTTGCCGGGACCATCAGATGATACAGAAATAGGATCTGCAAAGGAGGTTGTGCCCCATTTTGGAGATAAATGGGTTGTGTCAAAGGGACAATTTCTTGGCATTCTGGTTTGCAACCACGCATGTAGAACTGTTCAGAGTTCTCAGGTGGTTGCTCCCAAAGCTGAGCACGATGATAACACTCTAGATTTGCTCTTGGTTCATGGGAGTGGAAGGCTGAGGCTGTTGAGATTTTTCTTACTTCTACAAATGGGTCGACATCTTTCACTGCCATATGTTGAATATGTCAAGGTAAAGTCTGTGAGGATAAAGCCTGGGAAGCACACTCACAGTGGATGTGGTATTGATGGTGAGCTTTTCCCACTCAATGGACAAGTAATTTCTTCTTTGCTTCCAGAACAGTGCAGGCTTGTTGGTCGCTTTCGTATATGA
Predicted protein sequences of Glyma19g00900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g00900.1 sequence type=predicted peptide gene model=Glyma19g00900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRDMHRNSTGSTNTNKISSSAIRLPSPQQSLRRLGLCSQIATGEHSSPIVFPEKRGKVKATSRKTSVPPTTIRPDDQDITKNFEHRIDIAGAGGGGGDEKSDLLGYVVFSGKLILDKRKLATINNAAADAQQSSSDITNQNAVDAKLTSKALAWGSHVLHLYDVISVSYNAGLRHFTVHSYPLKEASCGLSCFIKSRRSRKDFRFVASSIEEALQWVGGFADQHCFVNCLPHPLLSSKKQASSELLHTDTPPELLFRCKTPPKMLVILNPRSGRGRSSKVFHGIVEPIFKLAGFRLEVVKTTSAGHARNLASSVDISTCPDGIICVGGDGIINEVLNGLLSRDNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAAMAIVKGGLTATDVFAVEWIQTNKIHYGLTVSYYGFLSDVLELSEKYQKRFGPLRYFVAGFFKFLCLPHYSYEVEYLPASKTEGEGKLSGEKEVVDMSDLYTDIMSRSNKDGMPRASSLSSIDSIMTPSRISGGDLDTCSSTHASTEPSELVRGLDPKSKRLSSGRGNVTAEPEVIHPQLPLSTTPNWPRTRSKSRNDKGWTGLTTTHDTSRWGNTATNDREDISSTLSDPGPIWDAEPKWDAEPNNWDVENPIELPGPSDDTEIGSAKEVVPHFGDKWVVSKGQFLGILVCNHACRTVQSSQVVAPKAEHDDNTLDLLLVHGSGRLRLLRFFLLLQMGRHLSLPYVEYVKVKSVRIKPGKHTHSGCGIDGELFPLNGQVISSLLPEQCRLVGRFRI*