SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23450 | AT | Annotation by Michelle Graham. TAIR10: long-chain base (LCB) kinase 1 | chr5:7905041-7908960 REVERSE LENGTH=763 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0007205 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0016926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein desumoylation | SoyBase | N/A | ISS |
| GO:0030148 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sphingolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0042546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0050665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004143 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity | SoyBase | N/A | ISS |
| GO:0017050 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: D-erythro-sphingosine kinase activity | SoyBase | N/A | ISS |
| KOG1116 | KOG | Sphingosine kinase, involved in sphingolipid metabolism | JGI | ISS | |
| PTHR12358 | Panther | SPHINGOSINE KINASE | JGI | ISS | |
| PTHR12358:SF5 | Panther | SPHINGOSINE KINASE 1 | JGI | ISS | |
| PF00781 | PFAM | Diacylglycerol kinase catalytic domain | JGI | ISS | |
| UniRef100_I1N5N4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5N4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q5KR50 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sphingosine kinase n=1 Tax=Lotus japonicus RepID=Q5KR50_LOTJA | SoyBase | E_val: 0 | ISS |
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Glyma19g00900 not represented in the dataset |
Glyma19g00900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g09400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g000300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g00900.1 sequence type=CDS gene model=Glyma19g00900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGATATGCACCGGAATTCTACTGGTAGTACTAACACTAATAAGATATCATCATCGGCAATAAGGCTGCCCTCACCTCAACAATCTCTAAGACGCTTGGGATTGTGTTCCCAGATAGCTACGGGGGAGCACTCTTCTCCTATCGTCTTCCCTGAAAAACGTGGCAAAGTCAAGGCGACTTCCAGGAAGACCAGTGTCCCCCCCACTACCATTCGTCCAGATGATCAGGACATAACCAAGAATTTTGAGCATAGGATTGACATTGCAGGGGCTGGAGGAGGAGGAGGAGATGAGAAGTCTGATTTGTTAGGATATGTCGTATTCTCTGGAAAACTCATTTTGGATAAGAGAAAACTTGCTACAATAAATAATGCTGCTGCTGATGCTCAACAATCTTCTTCTGATATAACCAACCAAAATGCTGTAGATGCCAAACTAACAAGCAAGGCCTTGGCTTGGGGATCCCATGTGCTGCATCTTTATGATGTTATCTCGGTTTCTTATAATGCTGGTCTCAGACATTTCACAGTGCACTCCTACCCATTGAAAGAAGCTTCATGTGGGCTTTCTTGCTTTATAAAATCTCGACGAAGTCGCAAGGACTTCCGCTTTGTTGCTTCTAGCATAGAAGAAGCACTTCAATGGGTTGGTGGATTTGCAGATCAACACTGTTTCGTGAATTGTCTTCCTCACCCTTTACTGTCTTCGAAGAAGCAAGCGTCCTCAGAATTACTTCATACAGATACCCCTCCTGAATTGCTCTTTAGATGTAAAACTCCACCTAAGATGCTTGTGATTTTAAACCCACGATCAGGTCGGGGTCGTTCAAGTAAAGTTTTCCATGGCATTGTGGAACCCATATTTAAGCTTGCTGGGTTTAGATTGGAGGTAGTCAAAACAACATCTGCTGGTCATGCTAGAAATCTTGCATCAAGTGTAGACATCAGCACTTGCCCTGATGGAATTATCTGTGTTGGTGGTGATGGGATAATCAATGAGGTTCTTAATGGTCTCCTTAGTAGAGACAATCAAAAGGAAGGAATATCTATACCAATTGGAATTATACCGGCTGGTTCTGATAACTCACTGGTATGGACTGTTCTTGGAGTTAGAGATCCAGTTTCTGCAGCCATGGCTATTGTAAAGGGGGGTCTTACTGCTACAGATGTCTTTGCTGTTGAATGGATTCAGACCAATAAAATTCACTACGGATTAACTGTCTCATATTATGGTTTTCTTAGTGATGTGTTGGAACTTTCTGAAAAATATCAGAAGCGCTTTGGCCCGCTGCGGTATTTTGTTGCTGGATTCTTCAAGTTCCTGTGCTTACCACACTACAGCTATGAAGTTGAATATCTTCCAGCTTCAAAGACTGAGGGAGAAGGAAAGCTTTCAGGTGAAAAGGAAGTAGTTGACATGTCAGATCTGTACACTGACATCATGAGCAGATCAAATAAGGATGGAATGCCCAGAGCATCTAGTCTTTCAAGTATTGACTCGATAATGACTCCTAGTCGTATATCTGGTGGAGACCTGGATACCTGTAGTAGCACCCATGCTAGCACTGAACCTTCTGAATTGGTGCGTGGCTTAGATCCAAAGTCCAAGCGCCTATCGTCTGGAAGGGGCAATGTAACAGCAGAGCCAGAAGTTATCCATCCGCAGCTGCCTCTGTCAACAACTCCCAACTGGCCAAGAACCAGATCTAAGTCAAGGAATGATAAAGGATGGACTGGATTGACCACAACACATGATACCTCTAGATGGGGAAATACTGCGACAAATGATAGAGAGGATATATCATCAACACTGTCTGATCCAGGTCCTATATGGGATGCTGAACCAAAATGGGATGCCGAACCTAATAATTGGGATGTAGAAAATCCAATTGAGTTGCCGGGACCATCAGATGATACAGAAATAGGATCTGCAAAGGAGGTTGTGCCCCATTTTGGAGATAAATGGGTTGTGTCAAAGGGACAATTTCTTGGCATTCTGGTTTGCAACCACGCATGTAGAACTGTTCAGAGTTCTCAGGTGGTTGCTCCCAAAGCTGAGCACGATGATAACACTCTAGATTTGCTCTTGGTTCATGGGAGTGGAAGGCTGAGGCTGTTGAGATTTTTCTTACTTCTACAAATGGGTCGACATCTTTCACTGCCATATGTTGAATATGTCAAGGTAAAGTCTGTGAGGATAAAGCCTGGGAAGCACACTCACAGTGGATGTGGTATTGATGGTGAGCTTTTCCCACTCAATGGACAAGTAATTTCTTCTTTGCTTCCAGAACAGTGCAGGCTTGTTGGTCGCTTTCGTATATGA
>Glyma19g00900.1 sequence type=predicted peptide gene model=Glyma19g00900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRDMHRNSTGSTNTNKISSSAIRLPSPQQSLRRLGLCSQIATGEHSSPIVFPEKRGKVKATSRKTSVPPTTIRPDDQDITKNFEHRIDIAGAGGGGGDEKSDLLGYVVFSGKLILDKRKLATINNAAADAQQSSSDITNQNAVDAKLTSKALAWGSHVLHLYDVISVSYNAGLRHFTVHSYPLKEASCGLSCFIKSRRSRKDFRFVASSIEEALQWVGGFADQHCFVNCLPHPLLSSKKQASSELLHTDTPPELLFRCKTPPKMLVILNPRSGRGRSSKVFHGIVEPIFKLAGFRLEVVKTTSAGHARNLASSVDISTCPDGIICVGGDGIINEVLNGLLSRDNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAAMAIVKGGLTATDVFAVEWIQTNKIHYGLTVSYYGFLSDVLELSEKYQKRFGPLRYFVAGFFKFLCLPHYSYEVEYLPASKTEGEGKLSGEKEVVDMSDLYTDIMSRSNKDGMPRASSLSSIDSIMTPSRISGGDLDTCSSTHASTEPSELVRGLDPKSKRLSSGRGNVTAEPEVIHPQLPLSTTPNWPRTRSKSRNDKGWTGLTTTHDTSRWGNTATNDREDISSTLSDPGPIWDAEPKWDAEPNNWDVENPIELPGPSDDTEIGSAKEVVPHFGDKWVVSKGQFLGILVCNHACRTVQSSQVVAPKAEHDDNTLDLLLVHGSGRLRLLRFFLLLQMGRHLSLPYVEYVKVKSVRIKPGKHTHSGCGIDGELFPLNGQVISSLLPEQCRLVGRFRI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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