Glyma19g00890 - SoyBase

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Report for Sequence Feature Glyma19g00890

Feature Type:	gene_model
Chromosome:	Gm19
Start:	548263
stop:	563709
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g00890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G08390	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr5:2701448-2706910 FORWARD LENGTH=839	SoyBase	E_val: 0	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0267	KOG	Microtubule severing protein katanin p80 subunit B (contains WD40 repeats)	JGI		ISS
PTHR19845	Panther	KATANIN P80 SUBUNIT	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9RJ00	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Katanin P80 subunit, putative n=1 Tax=Ricinus communis RepID=B9RJ00_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F1A3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F1A3 related cluster n=1 Tax=unknown RepID=UPI000233F1A3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g00890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g00890

Paralog	Evidence	Comments
Glyma05g09341	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g00890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g000400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g00890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g00890

Limit To All Plant Sequences

>Glyma19g00890.3   sequence type=transcript   gene model=Glyma19g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATATTTTGATTTTGAACCTTCCCACTCTCAATCAGTCAGGTTAATTTGAACATAAGCACTATCATTACCGACTACCGAGGGGCAGAGTCACACACACAGATCGTGAAAGCGCCTCTCTACTCTCTTCTCTTCTTTGTTAGAGCTCTCTCACAGTCACACAGATCTTGGCTGTGCCTGCGCCTACGGTGATAGAGGAAACTGAAGCCTTTGGTACATGCCACGGTGGCAATAGCAGCATTATTACTCCTAAATTTTTCATGCTTATCTTGTGCTACACACTCTCTCTCTCTCTGCTAGAGCGCGCGCTAAAACTGTAATAAGTTTAAGAAGAGCAGGCAAAAGTGAATGTATCTATCTATCTGAAACAGCATTATTATTTGTTCGCTCTGTGCAACTGCAACTGCAACTGCAACCAACCGCGCTTTACCGAATGCCAACAAATAAAGCTGTGGGTAGTGAAGATCTGGGAATAATCTTAGAGTAAGAGTACCTAATTAGATCTCTCGAATGTCTCAAATCGAGAGCTGCTGTTCCTTTCACAACTACAATTGCTAGGGTTTTGATTCATTCTTACCAATGACTACCAAACGGGCTTACAAGCTTCAGGAATTTGTAGCACATGCTTCTACTGTCAATTGCCTCAAGATTGGACGGAAATCATCCAGGGTTCTTGTCACTGGAGGTGAAGATCACAAGGTCAATCTTTGGGCTATTGGCAAACCTAATGCCATACTGAGCCTGTCAGGACATTCAAGTGGAATAGATTCTGTAAGCTTTGATTCCTCTGAAGTGTTGGTAGCTGCTGGAGCTGCAAGTGGTACTATCAAACTTTGGGACTTAGAAGAGGCAAAGATTGTTCGTACTCTTACTGGTCATAGGTCCAATTGTACATCAGTGGACTTCCATCCTTTTGGAGAGTTCTTTGCATCTGGTTCTTTAGACACTAATCTTAAGATATGGGACATCAGAAAGAAGGGTTGTATCCATACTTACAAAGGCCACACTCGAGGGGTAAATGCAATTAGGTTTACCCCGGATGGGCGCTGGGTTGTTTCAGGTGGAGAGGACAATACTGTAAAGTTATGGGATCTGACTGCGGGGAAACTCTTGCATGATTTTAAATGTCACGAGGGCCAGATCCAATGTATAGATTTTCATCCCAATGAGTTTCTACTAGCAACAGGCTCGGCAGATAGAACAGTTAAATTCTGGGATCTTGAAACCTTTGAGCTTATTGGTTCAGCTGGTCCTGAGACAACTGGAGTGCGTTCTCTTACTTTTAGTCCTGATGGGAGGACCCTGCTTTGTGGTTTACATGAGAGTTTGAAGGTTTTCTCTTGGGAACCTATAAGATGCCATGATATGGTGGATGTGGGTTGGTCTAGATTGTCAGATCTTAATTTTCATGAAGGAAAACTTCTTGGCTGCTCATACAATCAAAGCTGTGTTGGAGTCTGGGTTGTGGACATCTCGCGTATAGAACCTTATGCACTTAATAATGTGAACCATCTAAATGGCCATTCAGAAACTAAATCTTCAAGTGGAAATATGACTGTACTGAATGAGATCACTGCTAAGGCTAGGCTATCTGTTTCACAAAATCCAGATCAATTACTAAAAGAAACAAGATCTCTTGGAAGGTTGTCCGTTTCTCAAGATTCAGACCCCTTAAAGGAGGGAAAATGTCTAGCATCCACAGGAAGTGCACCAAGTACTCCTCAAAGGATCAATTTGAATTCTGGACCCAAAACAGTACCCGGTGGTTCAACAACAGTGCTTAATACAACAGCTCAGAAAAAGAGTTCTTTGAAATCTCATACAACGTCCAGTGCTCCACTTATCAATAAATCAGATATTATACCCGTAATTGTCCCCAGAACTAGCATGAGGTCAGAGCCTGTGGCTGATTCTAGAAAAGAAGTTGGTGTTTCTGGAAGAACGATGCCATTCCCCTCACAGTCAAAGGCAGCAGATGTACGTAAATTTCCGAACAACAGAGATGATGTGGATAAGCCCCTCTCTCCTGTAATCGAATCTGCAGCTTCTAAGGGTAGTGAATTAAGTGGTTTTGCAGATAAAAATAATTTCCCTGCTTCTGTAAGCTCAACGCAAGATGAAGCTCGAGGACTGAAAGTAAACAGAGATGTATGCTCTGTCGAAGTACAAAAAGGAGGGAGAATGCGCTCACTTCTCAATTTAGAAAAGAGGGAACGATCTCTTAATTATGAGGGACCTAGACAAGGGATTTCTCATGGAAGGATATCATCAGTTCATGTGCTCCCTTTCAGTGGGAGAGCACATTCTATATCCACTGAGAAGGCTACAGTTTCTGCTACCGATGAAGATTCCATTGCTGATGTGATGGAACAGCATGACGAATTTCTTAGTTCAATGCTGGCTCGTTCAGCTAAGTTACAGATGGTCTTCAGATGTTGGGAAAGAAATGATGTTAAGGAGGTCATTGGCATAATGGCAAGGATGGATGATCATGCTGTGATTGCTGATGTTGTTAGCATTATAATGGAAAAAATTGATATCATTACACTTGAGATATGTGCTGGTCTTCTGCCACTTCTAACTGATCTTCTACAAAGTGAAATGGAAAGGTGAGTGATATCTCTTCTGATACAAGGCAGCAGTGTAAACGCATTGTGCTGGACAAATATTGTCAAAATTGAGAAAAGGAAGAAGAAAATGATAACCAGATTTCTGTGGGAATGAGGGGGAAGATCATTTTTAGAGAAAACTGGTGTTAGAATAATCCAATGTGTGGGTAACTAAGGCCATGATTAACCTTGTCTGAATTTCATTGGATATCATTCTCTCTCAATATGAGTACTAACTAACTGGTGTAGAAGGTATTCCCAACAGCAAGAATGAGGAGGTCATTTTGGGGATTTAAGGGAAAGGGGTGGATCATAAAAGTGATGATTCACTCTGTTTGATGTTTTATTAAATATAATTTCCCTCAATTTGTGTGTATTGGACCAGCTTAAAGGATACTTTTAACAGTATTATGCAGTAACTATTAATTGTGAGTTTTTCTTATTTTGTGGAGAGAGAAAGAGGAAGGAATTTATCCAAGGA

Coding sequences of Glyma19g00890

Limit To All Plant Sequences

>Glyma19g00890.2   sequence type=CDS   gene model=Glyma19g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTACCAAACGGGCTTACAAGCTTCAGGAATTTGTAGCACATGCTTCTACTGTCAATTGCCTCAAGATTGGACGGAAATCATCCAGGGTTCTTGTCACTGGAGGTGAAGATCACAAGGTCAATCTTTGGGCTATTGGCAAACCTAATGCCATACTGAGCCTGTCAGGACATTCAAGTGGAATAGATTCTGTAAGCTTTGATTCCTCTGAAGTGTTGGTAGCTGCTGGAGCTGCAAGTGGTACTATCAAACTTTGGGACTTAGAAGAGGCAAAGATTGTTCGTACTCTTACTGGTCATAGGTCCAATTGTACATCAGTGGACTTCCATCCTTTTGGAGAGTTCTTTGCATCTGGTTCTTTAGACACTAATCTTAAGATATGGGACATCAGAAAGAAGGGTTGTATCCATACTTACAAAGGCCACACTCGAGGGGTAAATGCAATTAGGTTTACCCCGGATGGGCGCTGGGTTGTTTCAGGTGGAGAGGACAATACTGTAAAGTTATGGGATCTGACTGCGGGGAAACTCTTGCATGATTTTAAATGTCACGAGGGCCAGATCCAATGTATAGATTTTCATCCCAATGAGTTTCTACTAGCAACAGGCTCGGCAGATAGAACAGTTAAATTCTGGGATCTTGAAACCTTTGAGCTTATTGGTTCAGCTGGTCCTGAGACAACTGGAGTGCGTTCTCTTACTTTTAGTCCTGATGGGAGGACCCTGCTTTGTGGTTTACATGAGAGTTTGAAGGTTTTCTCTTGGGAACCTATAAGATGCCATGATATGGTGGATGTGGGTTGGTCTAGATTGTCAGATCTTAATTTTCATGAAGGAAAACTTCTTGGCTGCTCATACAATCAAAGCTGTGTTGGAGTCTGGGTTGTGGACATCTCGCGTATAGAACCTTATGCACTTAATAATGTGAACCATCTAAATGGCCATTCAGAAACTAAATCTTCAAGTGGAAATATGACTGTACTGAATGAGATCACTGCTAAGGCTAGGCTATCTGTTTCACAAAATCCAGATCAATTACTAAAAGAAACAAGATCTCTTGGAAGGTTGTCCGTTTCTCAAGATTCAGACCCCTTAAAGGAGGGAAAATGTCTAGCATCCACAGGAAGTGCACCAAGTACTCCTCAAAGGATCAATTTGAATTCTGGACCCAAAACAGTACCCGGTGGTTCAACAACAGTGCTTAATACAACAGCTCAGAAAAAGAGTTCTTTGAAATCTCATACAACGTCCAGTGCTCCACTTATCAATAAATCAGATATTATACCCGTAATTGTCCCCAGAACTAGCATGAGGTCAGAGCCTGTGGCTGATTCTAGAAAAGAAGTTGGTGTTTCTGGAAGAACGATGCCATTCCCCTCACAGTCAAAGGCAGCAGATGTACGTAAATTTCCGAACAACAGAGATGATGTGGATAAGCCCCTCTCTCCTGTAATCGAATCTGCAGCTTCTAAGGGTAGTGAATTAAGTGGTTTTGCAGATAAAAATAATTTCCCTGCTTCTGTAAGCTCAACGCAAGATGAAGCTCGAGGACTGAAAGTAAACAGAGATGTATGCTCTGTCGAAGTACAAAAAGGAGGGAGAATGCGCTCACTTCTCAATTTAGAAAAGAGGGAACGATCTCTTAATTATGAGGGACCTAGACAAGGGATTTCTCATGGAAGGATATCATCAGTTCATGTGCTCCCTTTCAGTGGGAGAGCACATTCTATATCCACTGAGAAGGCTACAGTTTCTGCTACCGATGAAGATTCCATTGCTGATGTGATGGAACAGCATGACGAATTTCTTAGTTCAATGCTGGCTCGTTCAGCTAAGTTACAGATGGTCTTCAGATGTTGGGAAAGAAATGATGTTAAGGAGGTCATTGGCATAATGGCAAGGATGGATGATCATGCTGTGATTGCTGATGTTGTTAGCATTATAATGGAAAAAATTGATATCATTACACTTGAGATATGTGCTGGTCTTCTGCCACTTCTAACTGATCTTCTACAAAGTGAAATGGAAAGACATCTAGGAATATCCTTGGAAATGCTATTGAAACTGGTCAGAATATTTGGTTCAGTAATCTATTCAACCGTATCAGCTACACAACCTGTTGGTGTCGATATCGAGGCAGAGAACAGGCTAGAGCGTTGCAACCTCTGCTTCACAGAGCTTGAAAAAGTCAAACGTTTTTTGCCTTCTCTTTCAAGAAGAGGAGGATCAATTGCAAAATCTGCACAAGAGTTGAATCTGGCTTTGCAGGATGTTTCGTGA

>Glyma19g00890.3   sequence type=CDS   gene model=Glyma19g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTACCAAACGGGCTTACAAGCTTCAGGAATTTGTAGCACATGCTTCTACTGTCAATTGCCTCAAGATTGGACGGAAATCATCCAGGGTTCTTGTCACTGGAGGTGAAGATCACAAGGTCAATCTTTGGGCTATTGGCAAACCTAATGCCATACTGAGCCTGTCAGGACATTCAAGTGGAATAGATTCTGTAAGCTTTGATTCCTCTGAAGTGTTGGTAGCTGCTGGAGCTGCAAGTGGTACTATCAAACTTTGGGACTTAGAAGAGGCAAAGATTGTTCGTACTCTTACTGGTCATAGGTCCAATTGTACATCAGTGGACTTCCATCCTTTTGGAGAGTTCTTTGCATCTGGTTCTTTAGACACTAATCTTAAGATATGGGACATCAGAAAGAAGGGTTGTATCCATACTTACAAAGGCCACACTCGAGGGGTAAATGCAATTAGGTTTACCCCGGATGGGCGCTGGGTTGTTTCAGGTGGAGAGGACAATACTGTAAAGTTATGGGATCTGACTGCGGGGAAACTCTTGCATGATTTTAAATGTCACGAGGGCCAGATCCAATGTATAGATTTTCATCCCAATGAGTTTCTACTAGCAACAGGCTCGGCAGATAGAACAGTTAAATTCTGGGATCTTGAAACCTTTGAGCTTATTGGTTCAGCTGGTCCTGAGACAACTGGAGTGCGTTCTCTTACTTTTAGTCCTGATGGGAGGACCCTGCTTTGTGGTTTACATGAGAGTTTGAAGGTTTTCTCTTGGGAACCTATAAGATGCCATGATATGGTGGATGTGGGTTGGTCTAGATTGTCAGATCTTAATTTTCATGAAGGAAAACTTCTTGGCTGCTCATACAATCAAAGCTGTGTTGGAGTCTGGGTTGTGGACATCTCGCGTATAGAACCTTATGCACTTAATAATGTGAACCATCTAAATGGCCATTCAGAAACTAAATCTTCAAGTGGAAATATGACTGTACTGAATGAGATCACTGCTAAGGCTAGGCTATCTGTTTCACAAAATCCAGATCAATTACTAAAAGAAACAAGATCTCTTGGAAGGTTGTCCGTTTCTCAAGATTCAGACCCCTTAAAGGAGGGAAAATGTCTAGCATCCACAGGAAGTGCACCAAGTACTCCTCAAAGGATCAATTTGAATTCTGGACCCAAAACAGTACCCGGTGGTTCAACAACAGTGCTTAATACAACAGCTCAGAAAAAGAGTTCTTTGAAATCTCATACAACGTCCAGTGCTCCACTTATCAATAAATCAGATATTATACCCGTAATTGTCCCCAGAACTAGCATGAGGTCAGAGCCTGTGGCTGATTCTAGAAAAGAAGTTGGTGTTTCTGGAAGAACGATGCCATTCCCCTCACAGTCAAAGGCAGCAGATGTACGTAAATTTCCGAACAACAGAGATGATGTGGATAAGCCCCTCTCTCCTGTAATCGAATCTGCAGCTTCTAAGGGTAGTGAATTAAGTGGTTTTGCAGATAAAAATAATTTCCCTGCTTCTGTAAGCTCAACGCAAGATGAAGCTCGAGGACTGAAAGTAAACAGAGATGTATGCTCTGTCGAAGTACAAAAAGGAGGGAGAATGCGCTCACTTCTCAATTTAGAAAAGAGGGAACGATCTCTTAATTATGAGGGACCTAGACAAGGGATTTCTCATGGAAGGATATCATCAGTTCATGTGCTCCCTTTCAGTGGGAGAGCACATTCTATATCCACTGAGAAGGCTACAGTTTCTGCTACCGATGAAGATTCCATTGCTGATGTGATGGAACAGCATGACGAATTTCTTAGTTCAATGCTGGCTCGTTCAGCTAAGTTACAGATGGTCTTCAGATGTTGGGAAAGAAATGATGTTAAGGAGGTCATTGGCATAATGGCAAGGATGGATGATCATGCTGTGATTGCTGATGTTGTTAGCATTATAATGGAAAAAATTGATATCATTACACTTGAGATATGTGCTGGTCTTCTGCCACTTCTAACTGATCTTCTACAAAGTGAAATGGAAAGGTGA

Predicted protein sequences of Glyma19g00890

Limit To All Plant Sequences

>Glyma19g00890.2   sequence type=predicted peptide   gene model=Glyma19g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTKRAYKLQEFVAHASTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHSSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCTSVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPNEFLLATGSADRTVKFWDLETFELIGSAGPETTGVRSLTFSPDGRTLLCGLHESLKVFSWEPIRCHDMVDVGWSRLSDLNFHEGKLLGCSYNQSCVGVWVVDISRIEPYALNNVNHLNGHSETKSSSGNMTVLNEITAKARLSVSQNPDQLLKETRSLGRLSVSQDSDPLKEGKCLASTGSAPSTPQRINLNSGPKTVPGGSTTVLNTTAQKKSSLKSHTTSSAPLINKSDIIPVIVPRTSMRSEPVADSRKEVGVSGRTMPFPSQSKAADVRKFPNNRDDVDKPLSPVIESAASKGSELSGFADKNNFPASVSSTQDEARGLKVNRDVCSVEVQKGGRMRSLLNLEKRERSLNYEGPRQGISHGRISSVHVLPFSGRAHSISTEKATVSATDEDSIADVMEQHDEFLSSMLARSAKLQMVFRCWERNDVKEVIGIMARMDDHAVIADVVSIIMEKIDIITLEICAGLLPLLTDLLQSEMERHLGISLEMLLKLVRIFGSVIYSTVSATQPVGVDIEAENRLERCNLCFTELEKVKRFLPSLSRRGGSIAKSAQELNLALQDVS*

>Glyma19g00890.3   sequence type=predicted peptide   gene model=Glyma19g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTKRAYKLQEFVAHASTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHSSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCTSVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPNEFLLATGSADRTVKFWDLETFELIGSAGPETTGVRSLTFSPDGRTLLCGLHESLKVFSWEPIRCHDMVDVGWSRLSDLNFHEGKLLGCSYNQSCVGVWVVDISRIEPYALNNVNHLNGHSETKSSSGNMTVLNEITAKARLSVSQNPDQLLKETRSLGRLSVSQDSDPLKEGKCLASTGSAPSTPQRINLNSGPKTVPGGSTTVLNTTAQKKSSLKSHTTSSAPLINKSDIIPVIVPRTSMRSEPVADSRKEVGVSGRTMPFPSQSKAADVRKFPNNRDDVDKPLSPVIESAASKGSELSGFADKNNFPASVSSTQDEARGLKVNRDVCSVEVQKGGRMRSLLNLEKRERSLNYEGPRQGISHGRISSVHVLPFSGRAHSISTEKATVSATDEDSIADVMEQHDEFLSSMLARSAKLQMVFRCWERNDVKEVIGIMARMDDHAVIADVVSIIMEKIDIITLEICAGLLPLLTDLLQSEMER*

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