Glyma19g00870 - SoyBase

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Report for Sequence Feature Glyma19g00870

Feature Type:	gene_model
Chromosome:	Gm19
Start:	536748
stop:	539431
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g00870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G08570	AT	Annotation by Michelle Graham. TAIR10: Pyruvate kinase family protein \| chr5:2778433-2780300 FORWARD LENGTH=510	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyruvate kinase activity	SoyBase	N/A	ISS
GO:0030955	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium ion binding	SoyBase	N/A	ISS
KOG2323	KOG	Pyruvate kinase	JGI		ISS
PTHR11817	Panther	PYRUVATE KINASE	JGI		ISS
PF00224	PFAM	Pyruvate kinase, barrel domain	JGI		ISS
PF02887	PFAM	Pyruvate kinase, alpha/beta domain	JGI		ISS
UniRef100_I1N5N0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate kinase n=1 Tax=Glycine max RepID=I1N5N0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1N5N0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Pyruvate kinase n=1 Tax=Glycine max RepID=I1N5N0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g00870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00870 not represented in the dataset	Glyma19g00870 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g00870

Paralog	Evidence	Comments
Glyma05g09310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g00870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g000700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g00870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g00870

Limit To All Plant Sequences

>Glyma19g00870.2   sequence type=transcript   gene model=Glyma19g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTGTTTACTTAGATATCTCATAGTCATATCTGTGTTGTGTAGAGAGAAGTAAAGTAAAGCAAAGGAATGGCGAACATAGACATCGAAGGGATCTTGAAGCAGCAGCCTGATGATGGGCGCGTTCCGAAGACGAAAATAGTGTGTACTTTGGGCCCCGCTTCTCGATCCGTGGAAATGACTGAGAAGCTTCTTAGGGCTGGGATGAACGTTGCTCGTTTCAATTTCTCTCATGGCACCCACGACTATCATCAGGAAACCCTCAACAATCTCAAGACTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAGGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTTAAGGAAGGACAAGAAATCACCATAACTACTGATTATGACATTAAGGGGGATCAGGAGATGATATCCATGAGTTACAAGAAGCTGCCTGTCCACTTGAAGCCTGGAAACACCATATTGTGCTCTGATGGGACGATTACTCTCACTGTCTTATCTTGTGATCCTGATGCTGGTACTGTTAGATGTCGTTGTGAAAACACTGCTACGTTGGGTGAGAGAAAAAATGTTAACCTTCCTGGTGTTGTTGTTGATCTCCCCACACTTACTGAGAAGGATAAGGAAGATATTCTTCAATGGGGTGTACCCAACAAGATTGACATGATTGCTCTTTCATTTGTTCGCAAAGGCTCAGATCTTGTTAATGTCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAGGTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACTGATGCATTCATGGTGGCACGAGGTGATCTTGGAATGGAGATCCCAGTTGAAAAGATATTCCTGGCGCAGAAGATGATGATATACAAGTGTAATCTGGTTGGGAAGCCAGTGGTGACTGCTACCCAAATGCTTGAATCAATGATAAAGTCTCCCAGGCCAACCCGAGCTGAAGCAACTGACGTAGCCAATGCAGTTCTTGATGGAACAGATTGTGTGATGCTTAGTGGTGAAAGTGCTGCTGGGGCATACCCAGAACTTGCTGTGAAAATCATGGCTCGTATCTGCATTGAAGCAGAATCATCCCTTGACTATGGTGCCATCTTCAAAGAGATGATAAGGTCTACACCATTGCCAATGAGTCCATTGGAGAGCCTTGCATCATCTGCTGTCCGCACAGCAAACAAGGCCAAAGCAAAACTCATTGTTGTACTGACACGTGGCGGGTCTACAGCTAAGTTGGTTGCTAAGTATAGGCCAGCGGTTCCAATATTATCGGTGGTGGTTCCAGTGTTGAGCACAGACTCATTTGATTGGACATGCAGTGATGAGACGCCAGCAAGGCACAGCTTGATATATAGGGGCTTGATTCCAATATTGGGGGAGGGATCCGCCAAGGCTACTGATGCAGAATCTACAGAGGTCATTCTCGAAGCTGCTCTTAAGTCCGCAACACAAAGGGGCCTTTGTAAGCCTGGTGATGCAGTTGTTGCCCTGCATCGTATTGGCACTGCCTCTGTCATAAAGATCTGCATAGTCAAATAATATTTCATGCTCAACTCATGCAGGGTTATTATGTTTTGACCTTTTTCTTTCTTTCTTTCTGCTGTTTATCCATATTATCATAAAATGGAGGATTTACTTACTACCTGTAGAACGACTGGGTTTTTGTATACTCTGTTTAAATTACGGAGTACTTCTAAATGAGTTTATCATGGAAATAATTACTATTTTTTTCCTTTTAAAATGTGATTGCTTTTGTTTCGTTGTCCTCCAAATTTTTGCCTCTGCCACCAGTTTCCTATTTCTTCCTTGTATTATAAAGTAGTAATACATTTAAAATCGTTCACGTTTCTATATTTTA

Coding sequences of Glyma19g00870

Limit To All Plant Sequences

>Glyma19g00870.1   sequence type=CDS   gene model=Glyma19g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAACATAGACATCGAAGGGATCTTGAAGCAGCAGCCTGATGATGGGCGCGTTCCGAAGACGAAAATAGTGTGTACTTTGGGCCCCGCTTCTCGATCCGTGGAAATGACTGAGAAGCTTCTTAGGGCTGGGATGAACGTTGCTCGTTTCAATTTCTCTCATGGCACCCACGACTATCATCAGGAAACCCTCAACAATCTCAAGACTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAGGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTTAAGGAAGGACAAGAAATCACCATAACTACTGATTATGACATTAAGGGGGATCAGGAGATGATATCCATGAGTTACAAGAAGCTGCCTGTCCACTTGAAGCCTGGAAACACCATATTGTGCTCTGATGGGACGATTACTCTCACTGTCTTATCTTGTGATCCTGATGCTGGTACTGTTAGATGTCGTTGTGAAAACACTGCTACGTTGGGTGAGAGAAAAAATGTTAACCTTCCTGGTGTTGTTGTTGATCTCCCCACACTTACTGAGAAGGATAAGGAAGATATTCTTCAATGGGGTGTACCCAACAAGATTGACATGATTGCTCTTTCATTTGTTCGCAAAGGCTCAGATCTTGTTAATGTCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAGGTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACTGATGCATTCATGGTGGCACGAGGTGATCTTGGAATGGAGATCCCAGTTGAAAAGATATTCCTGGCGCAGAAGATGATGATATACAAGTGTAATCTGGTTGGGAAGCCAGTGGTGACTGCTACCCAAATGCTTGAATCAATGATAAAGTCTCCCAGGCCAACCCGAGCTGAAGCAACTGACGTAGCCAATGCAGTTCTTGATGGAACAGATTGTGTGATGCTTAGTGGTGAAAGTGCTGCTGGGGCATACCCAGAACTTGCTGTGAAAATCATGGCTCGTATCTGCATTGAAGCAGAATCATCCCTTGACTATGGTGCCATCTTCAAAGAGATGATAAGGTCTACACCATTGCCAATGAGTCCATTGGAGAGCCTTGCATCATCTGCTGTCCGCACAGCAAACAAGGCCAAAGCAAAACTCATTGTTGTACTGACACGTGGCGGGTCTACAGCTAAGTTGGTTGCTAAGTATAGGCCAGCGGTTCCAATATTATCGGTGGTGGTTCCAGTGTTGAGCACAGACTCATTTGATTGGACATGCAGTGATGAGACGCCAGCAAGGCACAGCTTGATATATAGGGGCTTGATTCCAATATTGGGGGAGGGATCCGCCAAGGCTACTGATGCAGAATCTACAGAGGTCATTCTCGAAGCTGCTCTTAAGTCCGCAACACAAAGGGGCCTTTGTAAGCCTGGTGATGCAGTTGTTGCCCTGCATCGTATTGGCACTGCCTCTGTCATAAAGATCTGCATAGTCAAATAA

>Glyma19g00870.2   sequence type=CDS   gene model=Glyma19g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAACATAGACATCGAAGGGATCTTGAAGCAGCAGCCTGATGATGGGCGCGTTCCGAAGACGAAAATAGTGTGTACTTTGGGCCCCGCTTCTCGATCCGTGGAAATGACTGAGAAGCTTCTTAGGGCTGGGATGAACGTTGCTCGTTTCAATTTCTCTCATGGCACCCACGACTATCATCAGGAAACCCTCAACAATCTCAAGACTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAGGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTTAAGGAAGGACAAGAAATCACCATAACTACTGATTATGACATTAAGGGGGATCAGGAGATGATATCCATGAGTTACAAGAAGCTGCCTGTCCACTTGAAGCCTGGAAACACCATATTGTGCTCTGATGGGACGATTACTCTCACTGTCTTATCTTGTGATCCTGATGCTGGTACTGTTAGATGTCGTTGTGAAAACACTGCTACGTTGGGTGAGAGAAAAAATGTTAACCTTCCTGGTGTTGTTGTTGATCTCCCCACACTTACTGAGAAGGATAAGGAAGATATTCTTCAATGGGGTGTACCCAACAAGATTGACATGATTGCTCTTTCATTTGTTCGCAAAGGCTCAGATCTTGTTAATGTCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAGGTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACTGATGCATTCATGGTGGCACGAGGTGATCTTGGAATGGAGATCCCAGTTGAAAAGATATTCCTGGCGCAGAAGATGATGATATACAAGTGTAATCTGGTTGGGAAGCCAGTGGTGACTGCTACCCAAATGCTTGAATCAATGATAAAGTCTCCCAGGCCAACCCGAGCTGAAGCAACTGACGTAGCCAATGCAGTTCTTGATGGAACAGATTGTGTGATGCTTAGTGGTGAAAGTGCTGCTGGGGCATACCCAGAACTTGCTGTGAAAATCATGGCTCGTATCTGCATTGAAGCAGAATCATCCCTTGACTATGGTGCCATCTTCAAAGAGATGATAAGGTCTACACCATTGCCAATGAGTCCATTGGAGAGCCTTGCATCATCTGCTGTCCGCACAGCAAACAAGGCCAAAGCAAAACTCATTGTTGTACTGACACGTGGCGGGTCTACAGCTAAGTTGGTTGCTAAGTATAGGCCAGCGGTTCCAATATTATCGGTGGTGGTTCCAGTGTTGAGCACAGACTCATTTGATTGGACATGCAGTGATGAGACGCCAGCAAGGCACAGCTTGATATATAGGGGCTTGATTCCAATATTGGGGGAGGGATCCGCCAAGGCTACTGATGCAGAATCTACAGAGGTCATTCTCGAAGCTGCTCTTAAGTCCGCAACACAAAGGGGCCTTTGTAAGCCTGGTGATGCAGTTGTTGCCCTGCATCGTATTGGCACTGCCTCTGTCATAAAGATCTGCATAGTCAAATAA

Predicted protein sequences of Glyma19g00870

Limit To All Plant Sequences

>Glyma19g00870.1   sequence type=predicted peptide   gene model=Glyma19g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANIDIEGILKQQPDDGRVPKTKIVCTLGPASRSVEMTEKLLRAGMNVARFNFSHGTHDYHQETLNNLKTAMHNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITITTDYDIKGDQEMISMSYKKLPVHLKPGNTILCSDGTITLTVLSCDPDAGTVRCRCENTATLGERKNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDMIALSFVRKGSDLVNVRKVLGPHAKTIQLMSKVENQEGVLNFDEILRETDAFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPELAVKIMARICIEAESSLDYGAIFKEMIRSTPLPMSPLESLASSAVRTANKAKAKLIVVLTRGGSTAKLVAKYRPAVPILSVVVPVLSTDSFDWTCSDETPARHSLIYRGLIPILGEGSAKATDAESTEVILEAALKSATQRGLCKPGDAVVALHRIGTASVIKICIVK*

>Glyma19g00870.2   sequence type=predicted peptide   gene model=Glyma19g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANIDIEGILKQQPDDGRVPKTKIVCTLGPASRSVEMTEKLLRAGMNVARFNFSHGTHDYHQETLNNLKTAMHNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITITTDYDIKGDQEMISMSYKKLPVHLKPGNTILCSDGTITLTVLSCDPDAGTVRCRCENTATLGERKNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDMIALSFVRKGSDLVNVRKVLGPHAKTIQLMSKVENQEGVLNFDEILRETDAFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPELAVKIMARICIEAESSLDYGAIFKEMIRSTPLPMSPLESLASSAVRTANKAKAKLIVVLTRGGSTAKLVAKYRPAVPILSVVVPVLSTDSFDWTCSDETPARHSLIYRGLIPILGEGSAKATDAESTEVILEAALKSATQRGLCKPGDAVVALHRIGTASVIKICIVK*

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