SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12110 | AT | Annotation by Michelle Graham. TAIR10: actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0030036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005856 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0005200 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0676 | KOG | Actin and related proteins | JGI | ISS | |
| PTHR11937 | Panther | ACTIN | JGI | ISS | |
| PTHR11937:SF77 | Panther | ACTIN | JGI | ISS | |
| PF00022 | PFAM | Actin | JGI | ISS | |
| UniRef100_F6M9X4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Actin n=1 Tax=Platycodon grandiflorus RepID=F6M9X4_9ASTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N5M7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5M7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g00850 not represented in the dataset |
Glyma19g00850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g09290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g000900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g00850.1 sequence type=CDS gene model=Glyma19g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGACGCTGAGGATATTCAACCCCTTGTTTGCGACAATGGAACAGGAATGGTTAAGGCAGGATTTGCAGGAGATGATGCCCCACGTGCTGTGTTTCCTAGCATTGTTGGTCGTCCTCGTCACACTGGTGTGATGGTTGGTATGGGCCAGAAAGATGCATATGTTGGTGATGAAGCACAGTCTAAACGTGGTATTCTGACTCTCAAGTATCCGATTGAGCATGGTATTGTTAGCAACTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTGGCCCCAGAAGAACATCCAGTTCTGTTGACGGAGGCTCCTCTTAACCCTAAGGCTAACCGTGAGAAGATGACCCAAATTATGTTTGAGACCTTTAATGCCCCTGCTATGTATGTTGCTATTCAGGCTGTTCTTTCACTGTATGCCAGTGGCCGTACGACTGGTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTGCCTATCTATGAGGGTTATGCCCTCCCACATGCAATCCTTCGTCTTGATTTGGGTGGTCGTGACCTCACAGATTTCTTGATGAAGATTTTGACTGAACGTGGATATTCTTTTACCACCTCAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGCTGGCTTACATAGCCCTCGACTATGAGCAAGAGCTAGAGACATCCAAGACCAGCTCTTCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTTATCACTATTGGCGCTGAGCGTTTCAGGTGTCCGGAGGTCTTGTACCAACCATCCATGGTAGGAATGGAAGCATCAGGCATTCATGAAACAACATACAACTCCATAATGAAATGTGATGTTGACATCAGGAAAGACCTGTACGGTAACATTGTCCTTTCAGGAGGTACAACCATGTTTCCTGGCATCGCTGATAGAATGAGCAAGGAAATTTCTGCTTTAGCCCCAAGTAGCATGAAGATCAAGGTGGTAGCACCTCCTGAGAGAAAGTACAGTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAGATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCATAGAAAGTGCTTCTAA
>Glyma19g00850.1 sequence type=predicted peptide gene model=Glyma19g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLGGRDLTDFLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLYQPSMVGMEASGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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