SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G36730 | AT | Annotation by Michelle Graham. TAIR10: Translation initiation factor IF2/IF5 | chr1:13898706-13900025 REVERSE LENGTH=439 | SoyBase | E_val: 2.00E-176 | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0006446 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of translational initiation | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| KOG2767 | KOG | Translation initiation factor 5 (eIF-5) | JGI | ISS | |
| PTHR23001 | Panther | EUKARYOTIC TRANSLATION INITIATION FACTOR | JGI | ISS | |
| PTHR23001:SF1 | Panther | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 | JGI | ISS | |
| PF01873 | PFAM | Domain found in IF2B/IF5 | JGI | ISS | |
| PF02020 | PFAM | eIF4-gamma/eIF5/eIF2-epsilon | JGI | ISS | |
| UniRef100_I1N5M4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5M4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P48724 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 5 n=1 Tax=Phaseolus vulgaris RepID=IF5_PHAVU | SoyBase | E_val: 0 | ISS |
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Glyma19g00810 not represented in the dataset |
Glyma19g00810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g09260 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g001200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g00810.1 sequence type=CDS gene model=Glyma19g00810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTTGCAGAACATTGGTGCTGGAAATAGTGATGATGCCTTCTATCGGTATAAGATGCCTAAAATGATTACCAAGATCGAGGGTAGAGGAAATGGCATCAAAACAAATATTGTCAACATGGTTGACATTGCCAAGGCATTGGCAAGGCCACCCTCTTACACAACCAAGTACTTTGGTTGTGAACTTGGGGCCCAGTCTAAGTTTGATGAGAAAGTTGGGACTTCTCATGTTAATGGGTCACATGACACCCCAAAACTTGCTGGTCTTCTTGAGATCTTTATCAAGAAATATGTCCAGTGTTATGGTTGTGGAAACCCTGAAACTGAGATATTGATTACTAAGAACCAAATGATCCAGCTGAAATGCGCTGCTTGTGGTTTTGTGTCAGATGTGGATATGAGAGACAAGCTGACTAGCTTTATTATAAAAAACCCTCCTGAAACAAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGAGCCGAGAAGGAGAGACTGAAGGAAGGTGCAGCAGCTGATGAGGAACAAAAGAAAATGAAGAAAGAGACTAAGAAGAAAAGCTTATCTTCCACTTCCAAGGATGAGACCACAAAGTCAAACTCTACAAAGAAGAAAGCCAGTGGCTCTGATGAAGATTGTCGATCTCCAGATCACAGTCAAGTTGATGATGAGAAAGAAGAGGCACCTGATGAAGATGATGATGGTGAAGTACAATGGCTAACAGATACGTCATTAGAGGCTGCTCGGCAACGTATCCAAGAGCAGCTAAGTGCCGTAACAGCTGATATGGTCATGCTCTCCACAGATGAGCCAGAGAAGAAGGAAACAGCATCAAGTAAGAAAAGTGATGGTTCTGAAAATGGTAACACGATGCACTACAAGAAACTGGTTGGAGAAGTGAAAGCAATCTTGAACAAAGGTGTTGTGGCGAGTGAATTGCAGTCCCAAATGGAAGCAATTCCATCACCAGCTCAAGAAAAGATCAGTGCTCTGATTGAGGCCTTATTTGAGGGCATTGAGAAAGGGTTTGCAAAAGAGGTGGTCAAGAAGAAGCGCTACTTTGATGCTGCAGTTTCCATGGGGGAGGGATCACATTTGCTATTGCTTCGTGCAATTGAGGCTTTCTGTCTAAAGTCCACTTCCAATGCTTTGAAGGAAATTGCCATTGTTTTGAAGGCACTGTATGATGCTGATCTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAAGAAGGGCTTAAGGGTGACAACAAGCACTCTCAGATATGGAAGAATACCAAACCTTTGATTGAATGGCTTCAAAGTGCAGAATCAGAAACAGAGGAAGAATAA
>Glyma19g00810.1 sequence type=predicted peptide gene model=Glyma19g00810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALQNIGAGNSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPPSYTTKYFGCELGAQSKFDEKVGTSHVNGSHDTPKLAGLLEIFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTSFIIKNPPETKKGSKDKKAMRRAEKERLKEGAAADEEQKKMKKETKKKSLSSTSKDETTKSNSTKKKASGSDEDCRSPDHSQVDDEKEEAPDEDDDGEVQWLTDTSLEAARQRIQEQLSAVTADMVMLSTDEPEKKETASSKKSDGSENGNTMHYKKLVGEVKAILNKGVVASELQSQMEAIPSPAQEKISALIEALFEGIEKGFAKEVVKKKRYFDAAVSMGEGSHLLLLRAIEAFCLKSTSNALKEIAIVLKALYDADLLEEEHIVQWYQEGLKGDNKHSQIWKNTKPLIEWLQSAESETEEE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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