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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g00810

Feature Type:gene_model
Chromosome:Gm19
Start:507739
stop:509939
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G36730AT Annotation by Michelle Graham. TAIR10: Translation initiation factor IF2/IF5 | chr1:13898706-13900025 REVERSE LENGTH=439 SoyBaseE_val: 2.00E-176ISS
GO:0006413GO-bp Annotation by Michelle Graham. GO Biological Process: translational initiation SoyBaseN/AISS
GO:0006446GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of translational initiation SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003743GO-mf Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity SoyBaseN/AISS
KOG2767 KOG Translation initiation factor 5 (eIF-5) JGI ISS
PTHR23001Panther EUKARYOTIC TRANSLATION INITIATION FACTOR JGI ISS
PTHR23001:SF1Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 5 JGI ISS
PF01873PFAM Domain found in IF2B/IF5 JGI ISS
PF02020PFAM eIF4-gamma/eIF5/eIF2-epsilon JGI ISS
UniRef100_I1N5M4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5M4_SOYBN SoyBaseE_val: 0ISS
UniRef100_P48724UniRef Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 5 n=1 Tax=Phaseolus vulgaris RepID=IF5_PHAVU SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00810 not represented in the dataset

Glyma19g00810 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g09260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g001200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g00810.1   sequence type=CDS   gene model=Glyma19g00810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTGCAGAACATTGGTGCTGGAAATAGTGATGATGCCTTCTATCGGTATAAGATGCCTAAAATGATTACCAAGATCGAGGGTAGAGGAAATGGCATCAAAACAAATATTGTCAACATGGTTGACATTGCCAAGGCATTGGCAAGGCCACCCTCTTACACAACCAAGTACTTTGGTTGTGAACTTGGGGCCCAGTCTAAGTTTGATGAGAAAGTTGGGACTTCTCATGTTAATGGGTCACATGACACCCCAAAACTTGCTGGTCTTCTTGAGATCTTTATCAAGAAATATGTCCAGTGTTATGGTTGTGGAAACCCTGAAACTGAGATATTGATTACTAAGAACCAAATGATCCAGCTGAAATGCGCTGCTTGTGGTTTTGTGTCAGATGTGGATATGAGAGACAAGCTGACTAGCTTTATTATAAAAAACCCTCCTGAAACAAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGAGCCGAGAAGGAGAGACTGAAGGAAGGTGCAGCAGCTGATGAGGAACAAAAGAAAATGAAGAAAGAGACTAAGAAGAAAAGCTTATCTTCCACTTCCAAGGATGAGACCACAAAGTCAAACTCTACAAAGAAGAAAGCCAGTGGCTCTGATGAAGATTGTCGATCTCCAGATCACAGTCAAGTTGATGATGAGAAAGAAGAGGCACCTGATGAAGATGATGATGGTGAAGTACAATGGCTAACAGATACGTCATTAGAGGCTGCTCGGCAACGTATCCAAGAGCAGCTAAGTGCCGTAACAGCTGATATGGTCATGCTCTCCACAGATGAGCCAGAGAAGAAGGAAACAGCATCAAGTAAGAAAAGTGATGGTTCTGAAAATGGTAACACGATGCACTACAAGAAACTGGTTGGAGAAGTGAAAGCAATCTTGAACAAAGGTGTTGTGGCGAGTGAATTGCAGTCCCAAATGGAAGCAATTCCATCACCAGCTCAAGAAAAGATCAGTGCTCTGATTGAGGCCTTATTTGAGGGCATTGAGAAAGGGTTTGCAAAAGAGGTGGTCAAGAAGAAGCGCTACTTTGATGCTGCAGTTTCCATGGGGGAGGGATCACATTTGCTATTGCTTCGTGCAATTGAGGCTTTCTGTCTAAAGTCCACTTCCAATGCTTTGAAGGAAATTGCCATTGTTTTGAAGGCACTGTATGATGCTGATCTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAAGAAGGGCTTAAGGGTGACAACAAGCACTCTCAGATATGGAAGAATACCAAACCTTTGATTGAATGGCTTCAAAGTGCAGAATCAGAAACAGAGGAAGAATAA

>Glyma19g00810.1   sequence type=predicted peptide   gene model=Glyma19g00810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALQNIGAGNSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPPSYTTKYFGCELGAQSKFDEKVGTSHVNGSHDTPKLAGLLEIFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTSFIIKNPPETKKGSKDKKAMRRAEKERLKEGAAADEEQKKMKKETKKKSLSSTSKDETTKSNSTKKKASGSDEDCRSPDHSQVDDEKEEAPDEDDDGEVQWLTDTSLEAARQRIQEQLSAVTADMVMLSTDEPEKKETASSKKSDGSENGNTMHYKKLVGEVKAILNKGVVASELQSQMEAIPSPAQEKISALIEALFEGIEKGFAKEVVKKKRYFDAAVSMGEGSHLLLLRAIEAFCLKSTSNALKEIAIVLKALYDADLLEEEHIVQWYQEGLKGDNKHSQIWKNTKPLIEWLQSAESETEEE*







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