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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g00800

Feature Type:gene_model
Chromosome:Gm19
Start:503056
stop:506579
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G11120AT Annotation by Michelle Graham. TAIR10: translation elongation factor Ts (EF-Ts), putative | chr4:6778066-6779934 FORWARD LENGTH=395 SoyBaseE_val: 2.00E-159ISS
GO:0006414GO-bp Annotation by Michelle Graham. GO Biological Process: translational elongation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003746GO-mf Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity SoyBaseN/AISS
KOG1071 KOG Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt JGI ISS
PTHR11741Panther ELONGATION FACTOR TS JGI ISS
PF00889PFAM Elongation factor TS JGI ISS
UniRef100_I1N5M3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor Ts, mitochondrial n=1 Tax=Glycine max RepID=I1N5M3_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1N5M3UniRef Annotation by Michelle Graham. Best UniRef hit: Elongation factor Ts, mitochondrial n=1 Tax=Glycine max RepID=I1N5M3_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00800 not represented in the dataset

Glyma19g00800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g09251 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g001300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g00800.1   sequence type=CDS   gene model=Glyma19g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTTTACGGAGGCGCGAAACGCGTTTGTGTATCCATAAGGCACTATTGTTCGAATTCAGCGTCAGAGAAGGTGAATCTGATAAAGCAGCTGAGAGAGAGAACAAGCGCAGCTATGAAGGACGTGAAAGCGGCTCTGGTGGATTCGAATTGGGACATAGAGGAAGCTCAGAAGGAACTGAGGAAAAGAGGCAAAGTTTTGGCGTCCAAGAAATCCTCTCGAACTGCCTCCCAAGGCCTCCTCGCTCTCGCCCAATCCCCCACCAAACTCGCTCTCATCGAGCTCAACTGCGAGACCGACTTCGTTGCCCGAAACGACATCTTTCAGCACCTCGCTTTGCGTTTAGCCAACCAAGCTTTGTCTCTGTCGCTCGATTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCATCTTGGACCTCAATCCCTTCAGGACATGCCATTCAATCTCGACCATCCTAAGTTCAACGGCCAAACAACTGTTCACAACGCAATCACTGAGCTCGCCGCCATGATGGGGGAGAATGTCAGGCTTCGAAGAGGTTACGTCATTCCTGCATCACCCAATGGCTTCATTTCTACATATCTTCATACCAGCCCCCAACCAGGTTTGGGTCGCATTGCTGGAATTTTGTCTCTTCAAGTGGACGATGGTCAAACTCAACTCCAAGCTCTTCAACGTGTTGGATCCGAATTGGCTATGCATGTAGTCGCAGCAAAGCCATTGTTTTTAACTAAGGAACTTGTACCTTCAGATGCCTTAGAAAATGAGCGCGAAATTCTTAAATCTCAGGCAGAAGCCTCTGGTAAGCCTAAGATGGCCATAGAGAAAATGGTTGAAGGACGTCTCCGCAAGTATTTTGAGGATGTTGTATTTATGGACCAAAAGTTTATTATGAATGATACTATGAATGTGAAGGCAGTGCTGGATAATCTATCCAAGGAGGTGGGTTCATCTGTGAGGGTTGTTGATTTTCTCAGAATGGAAGTTGGGGAAGGAATTGCAAGGCAAGAAACAGATACATCTGAGACTGTTGCTCAGGTTGCCTGA

>Glyma19g00800.1   sequence type=predicted peptide   gene model=Glyma19g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFYGGAKRVCVSIRHYCSNSASEKVNLIKQLRERTSAAMKDVKAALVDSNWDIEEAQKELRKRGKVLASKKSSRTASQGLLALAQSPTKLALIELNCETDFVARNDIFQHLALRLANQALSLSLDSSSSSSSSSFHLGPQSLQDMPFNLDHPKFNGQTTVHNAITELAAMMGENVRLRRGYVIPASPNGFISTYLHTSPQPGLGRIAGILSLQVDDGQTQLQALQRVGSELAMHVVAAKPLFLTKELVPSDALENEREILKSQAEASGKPKMAIEKMVEGRLRKYFEDVVFMDQKFIMNDTMNVKAVLDNLSKEVGSSVRVVDFLRMEVGEGIARQETDTSETVAQVA*







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