Glyma19g00780 - SoyBase

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Report for Sequence Feature Glyma19g00780

Feature Type:	gene_model
Chromosome:	Gm19
Start:	488196
stop:	498700
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g00780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23590	AT	Annotation by Michelle Graham. TAIR10: REF4-related 1 \| chr3:8467638-8473469 FORWARD LENGTH=1309	SoyBase	E_val: 0	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:2000762	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0016592	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mediator complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_D7LHG0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Structural constituent of ribosome n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LHG0_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F1A0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F1A0 related cluster n=1 Tax=unknown RepID=UPI000233F1A0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g00780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g00780

Paralog	Evidence	Comments
Glyma05g09220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g00780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g001500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g00780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g00780

Limit To All Plant Sequences

>Glyma19g00780.1   sequence type=CDS   gene model=Glyma19g00780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAGTGTTTCAAAATATGAGCGAAGAAGAAGAAGAAGAAGAAGGAAGTGTGATGGATGGAGTTATGGAAGTAACCAAGTGGGCGCAGGAGAAGAAGACAGACCCTCTGATATGGTCGATCCAGGTCAGCTCCGCCCTGAACTCAGGCGGCGTCTCCCTCCCTTCCGTCGAGCTGGCACAGCGGCTGGTCTCCCACATCTGCTTCGAGAATCACGTGCCCATCACGTGGAAGTTCCTCGAGAAAGCCATGTCCGTCAGACTCCTCCCTCCTCTGCTCGTCCTCTCCCTCCTCTCCGCCCGCGTCGTCCCTCAGCGCCGCCTCCACCCTTCCGCCTACGCTCTCTACATGGACCTCCTCAGCCGCCACGCCTTCTCCCCTCACATCCACTTCCCCAATTACCTCAAAGTCATGGCCTCCATCCATCACTCCCTATCTCTTCCCCCCTCCAACCACCACCCTCATCCCGGCGTCGTTCTCGTTCACTTTCTCTTCTCTATCGTCTCGCAGCTTCTCCAATCTTCCTTGGACGACCAAGGATTTCTCCAACACAGCCCCGATCCCTACAACAACAACGATGCCTTGCACCGGAAAAACACTGCCATGGCCATTGAGATTATTGCGCGCTTTCTTCACCACAAACTCACTTCCAGAATCCTTGCATTGGTTCAACGAAACATGCCAGCGCATTGGGGACCTTTTCTACACCAGCTGCAGCAGCTTGCGGCAAACTCCACAGTGTTGAGGAGCTTGAAGCACGTCACTCCTGAGTCCCTTTTGCCTTTGGATTTCAATTCCACTACTGGAAATGGGATTAAGCTTCTGTCTTCTGACTGGAAAACAACACCTACGCTGGAACTCAATGCTGTCATGGCTGACTCTTGCGCAGTTCAGTCTCGTCACGATAGTTGGTCTTTGCTTTGGCTTCCTATTGATCTTATCCTTGAGGATGCAATGGATGGCAATCACGTCGCAGAAGCTAGTGCTGTTGAAGCACTCACTGGGTTGGTTAAGGCTTTGCAAGCAGTTAATGGTACTGCATGGCACAGTGCTTTTTTAGGCTTATGGATTGCAGCTCTACGGCTAGTTCAAAGGGAGAGGGATCCAGGAGAGGGGCCTGTACCTCGCCTTGATACCTGCTTGTCTATGTTATTGTGCATTACAACCCTTGTAGTTGCTAACCTTATTGAAGAAGAGGAAGGGAAACTTATTGAAGAAGCTGAACGTAGCCCTGCAAATCAAAGGATGGACAAGCAGGCTTTGGGAGAGCGTCATGGGGCATTGGTTACCAGCTTACAGCTATTGGGGGACTATGAGAATTTACTCACTCCTCCTCAATCTGTTATTTGGGGAGCCAATCAGGCTGCTGCCAAGGCTACCTTGTTTGTATCTGGACATAGTGGATACTTGGAACATACGAATGTGAATGACTTGCCCACAAACTGTTCTGGTAACTTAAGGCATCTCATTGTTGAGGCTTGTATTGCAAGACATCTGCTTGATACCTCAGCGTATTTCTGGCATGGTTATGTGAGCACACCTTTCAATCAGCTGCCTCATAGTATTCCTAACCATTTACCTAGCTGGTCATCATTGATGAAGGGATCACCACTAACTCCTCCATTGGTTAATGTCTTAGTTGCAACTCCTGCTTCTAGCTTAGCAGAGATTGAGAAAATATTTGAATTTGCAATCAATGGCTCGGATGAAGAAAAGATATCTGCTGCTACCATTCTTTGTGGGGCATCTTTAGTACGTGGTTGGAATGTGCAGGAACACATAGTTTTTTTCATCATAAATATGCTTTCACCTCCAGTTCCTCCTAAATATTCCGGGACAGAAAGTTATTTGATTAGCCATGCTCCTTTTTTGAATGTCTTTCTGGTGGGAATTTCATCTGTAGACAGTGTTCAGATATTCTCCCTACATGGCGTGGTTCCACTACTTGCAGCTGTCTTAATGCCAATATGCGAAGCTTTTGGATCATCTGTTCCTAATGTCTCATGGACTGCTGTAACTGGTGAAAAACTCACTTGTCATGCAGTGTTCTCTAATGCATTTATTCTCCTGCTGAGATTATGGCGGTTTGATCGTCCACCTGTTGAACATGTGATGGGGGGTGCAGCAACTCCAGCATTAGGATCACAATTAGGTCCTGAGTACCTTTTATTGGTTCGGAATTGTATGTTAGCAGCCTTTGGGAAATCACCAAGAGATCGAGTAAGGAGTAGAAGATTTTCAAAAATGATAAGATTTTCTCTCGAGCCTTTATTTATGGATTCCTTTCCTAAATTGAACATTTGGTATCGGCAACATCAAGAATGTATTGCATCCATCTGCAATACTCTTGCACCTGGAGGGCCAGTTTCTCAGATCGTTGAAGCACTACTTACCATGATGTGCAAGAAAATAAATCGAAGTGCTCAGTCATTGACACCTACAACTTCAGGAAGCAGCAATTCATCTCTTCCTTCATTGGATGATGCTTTGATGAAACTCAAAGTACCTGCATGGGACATCCTTGAAGCAACTCCATTTGTTCTTGATGCTGCTCTCACTGCTTGTGCTCATGGAAGTCTCTCTCCCCGTGAATTGGCTACAGGTCTCAAAGATCTTGCTGATTTTCTTCCGGCAACTTTGGGTACCATTGTAAGCTACTTATCATCTGAAGTAACACGTTGCATATGGAAGCCTGCTTTTATGAATGGAACTGATTGGCCTAGCCCTGCTGCAAATTTATCTATTGTTGAGCAACAAATCAAGAAAATTCTAGCGGCCACAGGTGTTGATGTTCCTAGCCTCGCTATAGATGGGAATGCTCCAGCTACACTTCCTTTGCCATTGGCGGCTCTTTTGAGTCTCACAATAACATATAAACTGGATAAATCTTGTGAGCGCTTTGTTATTTTGGCTGGCCCATCTTTGATTGCCCTTTCTTCTGGTTGCCCCTGGCCATGCATGCCCATTGTAGGTGCTTTGTGGGCTCAGAAGGTGAAGCGCTGGAGTGACTTTTTTGTATTCTCTGCTTCTGCAACTGTATTCCACCACAGCAGGGATGCCGTAGTTCAGCTTTTAAGAAGTTGCTTCGCCTCCACCCTTGGGCTTGGTTCTGCCTGCATTTATAACAATGGTGGTGTTGGCACCCTCCTTGGTCATGGCTTTGGTTCTCACTACTCTGGAGGGTTCACTCCGGTTGCTCCTGGGTTTCTCTACTTAAGAGTTTACAGGTCTATTAGAGATGTCATGTTCTTGACAGATGAAATTGTATCTCTTTTAATGCTTTCAGTTAGAGATATAGCAAATGGTGGGTTGCCCAAGGGTGAAGTGGAGAAGCTAAAGAAGACTAAGTATGGAATAAGATACGGACAGGTTTCTCTTGCTGCATCGATGACTCGCGTTAAGCACGCCGCTCTTCTTGGGGCTTCGATTCTTTGGATATCTGGTGGTTCAGGTTTGGTTCAATCTTTGATTACAGAAACTCTGCCTTCATGGTTTTTATCAGCCCAAGGGTTAGAGCAGGAAGGGGGAGAATCTGGAGTTGTGGTTGCTATGCTGAGAGGTTATGCACTTGCATGTTTTGCGGTACTTGGTGGGACTTTTGCCTGGGGTATCGACTCTTTGTCACCAGCATCAAAACGACGACCAAAGGTCCTTGAGATTCATTTAGAATTTCTTGCAAATGCACTAGATAGAAAAATATCTCTTCGCTGTGATTGTGCTACTTGGCGTGCATATGTGTCTGGGGTTATGAGCTTGATGGTGAGTTGCACGCCACTGTGGATTCAGGAACTTGATGTGGGTATATTGAAGAGAATGAGCAGCGGATTAAGACAGTTGAACGAAGAAGACTTGGCTCTGCGCCTATTAGAAATTAGAGGGACAAGCGTCATGGGTGAGGCAGCTGAAATGATCTGCCAAACTAGATTATAA

Predicted protein sequences of Glyma19g00780

Limit To All Plant Sequences

>Glyma19g00780.1   sequence type=predicted peptide   gene model=Glyma19g00780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEVFQNMSEEEEEEEGSVMDGVMEVTKWAQEKKTDPLIWSIQVSSALNSGGVSLPSVELAQRLVSHICFENHVPITWKFLEKAMSVRLLPPLLVLSLLSARVVPQRRLHPSAYALYMDLLSRHAFSPHIHFPNYLKVMASIHHSLSLPPSNHHPHPGVVLVHFLFSIVSQLLQSSLDDQGFLQHSPDPYNNNDALHRKNTAMAIEIIARFLHHKLTSRILALVQRNMPAHWGPFLHQLQQLAANSTVLRSLKHVTPESLLPLDFNSTTGNGIKLLSSDWKTTPTLELNAVMADSCAVQSRHDSWSLLWLPIDLILEDAMDGNHVAEASAVEALTGLVKALQAVNGTAWHSAFLGLWIAALRLVQRERDPGEGPVPRLDTCLSMLLCITTLVVANLIEEEEGKLIEEAERSPANQRMDKQALGERHGALVTSLQLLGDYENLLTPPQSVIWGANQAAAKATLFVSGHSGYLEHTNVNDLPTNCSGNLRHLIVEACIARHLLDTSAYFWHGYVSTPFNQLPHSIPNHLPSWSSLMKGSPLTPPLVNVLVATPASSLAEIEKIFEFAINGSDEEKISAATILCGASLVRGWNVQEHIVFFIINMLSPPVPPKYSGTESYLISHAPFLNVFLVGISSVDSVQIFSLHGVVPLLAAVLMPICEAFGSSVPNVSWTAVTGEKLTCHAVFSNAFILLLRLWRFDRPPVEHVMGGAATPALGSQLGPEYLLLVRNCMLAAFGKSPRDRVRSRRFSKMIRFSLEPLFMDSFPKLNIWYRQHQECIASICNTLAPGGPVSQIVEALLTMMCKKINRSAQSLTPTTSGSSNSSLPSLDDALMKLKVPAWDILEATPFVLDAALTACAHGSLSPRELATGLKDLADFLPATLGTIVSYLSSEVTRCIWKPAFMNGTDWPSPAANLSIVEQQIKKILAATGVDVPSLAIDGNAPATLPLPLAALLSLTITYKLDKSCERFVILAGPSLIALSSGCPWPCMPIVGALWAQKVKRWSDFFVFSASATVFHHSRDAVVQLLRSCFASTLGLGSACIYNNGGVGTLLGHGFGSHYSGGFTPVAPGFLYLRVYRSIRDVMFLTDEIVSLLMLSVRDIANGGLPKGEVEKLKKTKYGIRYGQVSLAASMTRVKHAALLGASILWISGGSGLVQSLITETLPSWFLSAQGLEQEGGESGVVVAMLRGYALACFAVLGGTFAWGIDSLSPASKRRPKVLEIHLEFLANALDRKISLRCDCATWRAYVSGVMSLMVSCTPLWIQELDVGILKRMSSGLRQLNEEDLALRLLEIRGTSVMGEAAEMICQTRL*

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