Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma19g00780): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma19g00780): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma19g00780
Feature Type: gene_model
Chromosome: Gm19
Start: 488196
stop: 498700
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g00780
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G23590 AT
Annotation by Michelle Graham. TAIR10: REF4-related 1 | chr3:8467638-8473469 FORWARD LENGTH=1309
SoyBase E_val: 0 ISS
GO:0007155 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell adhesion
SoyBase N/A ISS
GO:0010090 GO-bp
Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis
SoyBase N/A ISS
GO:0045010 GO-bp
Annotation by Michelle Graham. GO Biological Process: actin nucleation
SoyBase N/A ISS
GO:0048765 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation
SoyBase N/A ISS
GO:0071555 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall organization
SoyBase N/A ISS
GO:2000762 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of phenylpropanoid metabolic process
SoyBase N/A ISS
GO:0016592 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mediator complex
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_D7LHG0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Structural constituent of ribosome n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LHG0_ARALL
SoyBase E_val: 0 ISS
UniRef100_UPI000233F1A0 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F1A0 related cluster n=1 Tax=unknown RepID=UPI000233F1A0
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g00780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g00780
Paralog Evidence Comments
Glyma05g09220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g00780 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g001500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g00780
Coding sequences of Glyma19g00780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g00780.1 sequence type=CDS gene model=Glyma19g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAGAAGTGTTTCAAAATATGAGCGAAGAAGAAGAAGAAGAAGAAGGAAGTGTGATGGATGGAGTTATGGAAGTAACCAAGTGGGCGCAGGAGAAGAAGACAGACCCTCTGATATGGTCGATCCAGGTCAGCTCCGCCCTGAACTCAGGCGGCGTCTCCCTCCCTTCCGTCGAGCTGGCACAGCGGCTGGTCTCCCACATCTGCTTCGAGAATCACGTGCCCATCACGTGGAAGTTCCTCGAGAAAGCCATGTCCGTCAGACTCCTCCCTCCTCTGCTCGTCCTCTCCCTCCTCTCCGCCCGCGTCGTCCCTCAGCGCCGCCTCCACCCTTCCGCCTACGCTCTCTACATGGACCTCCTCAGCCGCCACGCCTTCTCCCCTCACATCCACTTCCCCAATTACCTCAAAGTCATGGCCTCCATCCATCACTCCCTATCTCTTCCCCCCTCCAACCACCACCCTCATCCCGGCGTCGTTCTCGTTCACTTTCTCTTCTCTATCGTCTCGCAGCTTCTCCAATCTTCCTTGGACGACCAAGGATTTCTCCAACACAGCCCCGATCCCTACAACAACAACGATGCCTTGCACCGGAAAAACACTGCCATGGCCATTGAGATTATTGCGCGCTTTCTTCACCACAAACTCACTTCCAGAATCCTTGCATTGGTTCAACGAAACATGCCAGCGCATTGGGGACCTTTTCTACACCAGCTGCAGCAGCTTGCGGCAAACTCCACAGTGTTGAGGAGCTTGAAGCACGTCACTCCTGAGTCCCTTTTGCCTTTGGATTTCAATTCCACTACTGGAAATGGGATTAAGCTTCTGTCTTCTGACTGGAAAACAACACCTACGCTGGAACTCAATGCTGTCATGGCTGACTCTTGCGCAGTTCAGTCTCGTCACGATAGTTGGTCTTTGCTTTGGCTTCCTATTGATCTTATCCTTGAGGATGCAATGGATGGCAATCACGTCGCAGAAGCTAGTGCTGTTGAAGCACTCACTGGGTTGGTTAAGGCTTTGCAAGCAGTTAATGGTACTGCATGGCACAGTGCTTTTTTAGGCTTATGGATTGCAGCTCTACGGCTAGTTCAAAGGGAGAGGGATCCAGGAGAGGGGCCTGTACCTCGCCTTGATACCTGCTTGTCTATGTTATTGTGCATTACAACCCTTGTAGTTGCTAACCTTATTGAAGAAGAGGAAGGGAAACTTATTGAAGAAGCTGAACGTAGCCCTGCAAATCAAAGGATGGACAAGCAGGCTTTGGGAGAGCGTCATGGGGCATTGGTTACCAGCTTACAGCTATTGGGGGACTATGAGAATTTACTCACTCCTCCTCAATCTGTTATTTGGGGAGCCAATCAGGCTGCTGCCAAGGCTACCTTGTTTGTATCTGGACATAGTGGATACTTGGAACATACGAATGTGAATGACTTGCCCACAAACTGTTCTGGTAACTTAAGGCATCTCATTGTTGAGGCTTGTATTGCAAGACATCTGCTTGATACCTCAGCGTATTTCTGGCATGGTTATGTGAGCACACCTTTCAATCAGCTGCCTCATAGTATTCCTAACCATTTACCTAGCTGGTCATCATTGATGAAGGGATCACCACTAACTCCTCCATTGGTTAATGTCTTAGTTGCAACTCCTGCTTCTAGCTTAGCAGAGATTGAGAAAATATTTGAATTTGCAATCAATGGCTCGGATGAAGAAAAGATATCTGCTGCTACCATTCTTTGTGGGGCATCTTTAGTACGTGGTTGGAATGTGCAGGAACACATAGTTTTTTTCATCATAAATATGCTTTCACCTCCAGTTCCTCCTAAATATTCCGGGACAGAAAGTTATTTGATTAGCCATGCTCCTTTTTTGAATGTCTTTCTGGTGGGAATTTCATCTGTAGACAGTGTTCAGATATTCTCCCTACATGGCGTGGTTCCACTACTTGCAGCTGTCTTAATGCCAATATGCGAAGCTTTTGGATCATCTGTTCCTAATGTCTCATGGACTGCTGTAACTGGTGAAAAACTCACTTGTCATGCAGTGTTCTCTAATGCATTTATTCTCCTGCTGAGATTATGGCGGTTTGATCGTCCACCTGTTGAACATGTGATGGGGGGTGCAGCAACTCCAGCATTAGGATCACAATTAGGTCCTGAGTACCTTTTATTGGTTCGGAATTGTATGTTAGCAGCCTTTGGGAAATCACCAAGAGATCGAGTAAGGAGTAGAAGATTTTCAAAAATGATAAGATTTTCTCTCGAGCCTTTATTTATGGATTCCTTTCCTAAATTGAACATTTGGTATCGGCAACATCAAGAATGTATTGCATCCATCTGCAATACTCTTGCACCTGGAGGGCCAGTTTCTCAGATCGTTGAAGCACTACTTACCATGATGTGCAAGAAAATAAATCGAAGTGCTCAGTCATTGACACCTACAACTTCAGGAAGCAGCAATTCATCTCTTCCTTCATTGGATGATGCTTTGATGAAACTCAAAGTACCTGCATGGGACATCCTTGAAGCAACTCCATTTGTTCTTGATGCTGCTCTCACTGCTTGTGCTCATGGAAGTCTCTCTCCCCGTGAATTGGCTACAGGTCTCAAAGATCTTGCTGATTTTCTTCCGGCAACTTTGGGTACCATTGTAAGCTACTTATCATCTGAAGTAACACGTTGCATATGGAAGCCTGCTTTTATGAATGGAACTGATTGGCCTAGCCCTGCTGCAAATTTATCTATTGTTGAGCAACAAATCAAGAAAATTCTAGCGGCCACAGGTGTTGATGTTCCTAGCCTCGCTATAGATGGGAATGCTCCAGCTACACTTCCTTTGCCATTGGCGGCTCTTTTGAGTCTCACAATAACATATAAACTGGATAAATCTTGTGAGCGCTTTGTTATTTTGGCTGGCCCATCTTTGATTGCCCTTTCTTCTGGTTGCCCCTGGCCATGCATGCCCATTGTAGGTGCTTTGTGGGCTCAGAAGGTGAAGCGCTGGAGTGACTTTTTTGTATTCTCTGCTTCTGCAACTGTATTCCACCACAGCAGGGATGCCGTAGTTCAGCTTTTAAGAAGTTGCTTCGCCTCCACCCTTGGGCTTGGTTCTGCCTGCATTTATAACAATGGTGGTGTTGGCACCCTCCTTGGTCATGGCTTTGGTTCTCACTACTCTGGAGGGTTCACTCCGGTTGCTCCTGGGTTTCTCTACTTAAGAGTTTACAGGTCTATTAGAGATGTCATGTTCTTGACAGATGAAATTGTATCTCTTTTAATGCTTTCAGTTAGAGATATAGCAAATGGTGGGTTGCCCAAGGGTGAAGTGGAGAAGCTAAAGAAGACTAAGTATGGAATAAGATACGGACAGGTTTCTCTTGCTGCATCGATGACTCGCGTTAAGCACGCCGCTCTTCTTGGGGCTTCGATTCTTTGGATATCTGGTGGTTCAGGTTTGGTTCAATCTTTGATTACAGAAACTCTGCCTTCATGGTTTTTATCAGCCCAAGGGTTAGAGCAGGAAGGGGGAGAATCTGGAGTTGTGGTTGCTATGCTGAGAGGTTATGCACTTGCATGTTTTGCGGTACTTGGTGGGACTTTTGCCTGGGGTATCGACTCTTTGTCACCAGCATCAAAACGACGACCAAAGGTCCTTGAGATTCATTTAGAATTTCTTGCAAATGCACTAGATAGAAAAATATCTCTTCGCTGTGATTGTGCTACTTGGCGTGCATATGTGTCTGGGGTTATGAGCTTGATGGTGAGTTGCACGCCACTGTGGATTCAGGAACTTGATGTGGGTATATTGAAGAGAATGAGCAGCGGATTAAGACAGTTGAACGAAGAAGACTTGGCTCTGCGCCTATTAGAAATTAGAGGGACAAGCGTCATGGGTGAGGCAGCTGAAATGATCTGCCAAACTAGATTATAA
Predicted protein sequences of Glyma19g00780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g00780.1 sequence type=predicted peptide gene model=Glyma19g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGEVFQNMSEEEEEEEGSVMDGVMEVTKWAQEKKTDPLIWSIQVSSALNSGGVSLPSVELAQRLVSHICFENHVPITWKFLEKAMSVRLLPPLLVLSLLSARVVPQRRLHPSAYALYMDLLSRHAFSPHIHFPNYLKVMASIHHSLSLPPSNHHPHPGVVLVHFLFSIVSQLLQSSLDDQGFLQHSPDPYNNNDALHRKNTAMAIEIIARFLHHKLTSRILALVQRNMPAHWGPFLHQLQQLAANSTVLRSLKHVTPESLLPLDFNSTTGNGIKLLSSDWKTTPTLELNAVMADSCAVQSRHDSWSLLWLPIDLILEDAMDGNHVAEASAVEALTGLVKALQAVNGTAWHSAFLGLWIAALRLVQRERDPGEGPVPRLDTCLSMLLCITTLVVANLIEEEEGKLIEEAERSPANQRMDKQALGERHGALVTSLQLLGDYENLLTPPQSVIWGANQAAAKATLFVSGHSGYLEHTNVNDLPTNCSGNLRHLIVEACIARHLLDTSAYFWHGYVSTPFNQLPHSIPNHLPSWSSLMKGSPLTPPLVNVLVATPASSLAEIEKIFEFAINGSDEEKISAATILCGASLVRGWNVQEHIVFFIINMLSPPVPPKYSGTESYLISHAPFLNVFLVGISSVDSVQIFSLHGVVPLLAAVLMPICEAFGSSVPNVSWTAVTGEKLTCHAVFSNAFILLLRLWRFDRPPVEHVMGGAATPALGSQLGPEYLLLVRNCMLAAFGKSPRDRVRSRRFSKMIRFSLEPLFMDSFPKLNIWYRQHQECIASICNTLAPGGPVSQIVEALLTMMCKKINRSAQSLTPTTSGSSNSSLPSLDDALMKLKVPAWDILEATPFVLDAALTACAHGSLSPRELATGLKDLADFLPATLGTIVSYLSSEVTRCIWKPAFMNGTDWPSPAANLSIVEQQIKKILAATGVDVPSLAIDGNAPATLPLPLAALLSLTITYKLDKSCERFVILAGPSLIALSSGCPWPCMPIVGALWAQKVKRWSDFFVFSASATVFHHSRDAVVQLLRSCFASTLGLGSACIYNNGGVGTLLGHGFGSHYSGGFTPVAPGFLYLRVYRSIRDVMFLTDEIVSLLMLSVRDIANGGLPKGEVEKLKKTKYGIRYGQVSLAASMTRVKHAALLGASILWISGGSGLVQSLITETLPSWFLSAQGLEQEGGESGVVVAMLRGYALACFAVLGGTFAWGIDSLSPASKRRPKVLEIHLEFLANALDRKISLRCDCATWRAYVSGVMSLMVSCTPLWIQELDVGILKRMSSGLRQLNEEDLALRLLEIRGTSVMGEAAEMICQTRL*