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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G23590 | AT | Annotation by Michelle Graham. TAIR10: REF4-related 1 | chr3:8467638-8473469 FORWARD LENGTH=1309 | SoyBase | E_val: 0 | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:2000762 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of phenylpropanoid metabolic process | SoyBase | N/A | ISS |
| GO:0016592 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mediator complex | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_D7LHG0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Structural constituent of ribosome n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LHG0_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F1A0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F1A0 related cluster n=1 Tax=unknown RepID=UPI000233F1A0 | SoyBase | E_val: 0 | ISS |
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Glyma19g00780 not represented in the dataset |
Glyma19g00780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g09220 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g001500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g00780.1 sequence type=CDS gene model=Glyma19g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGAAGTGTTTCAAAATATGAGCGAAGAAGAAGAAGAAGAAGAAGGAAGTGTGATGGATGGAGTTATGGAAGTAACCAAGTGGGCGCAGGAGAAGAAGACAGACCCTCTGATATGGTCGATCCAGGTCAGCTCCGCCCTGAACTCAGGCGGCGTCTCCCTCCCTTCCGTCGAGCTGGCACAGCGGCTGGTCTCCCACATCTGCTTCGAGAATCACGTGCCCATCACGTGGAAGTTCCTCGAGAAAGCCATGTCCGTCAGACTCCTCCCTCCTCTGCTCGTCCTCTCCCTCCTCTCCGCCCGCGTCGTCCCTCAGCGCCGCCTCCACCCTTCCGCCTACGCTCTCTACATGGACCTCCTCAGCCGCCACGCCTTCTCCCCTCACATCCACTTCCCCAATTACCTCAAAGTCATGGCCTCCATCCATCACTCCCTATCTCTTCCCCCCTCCAACCACCACCCTCATCCCGGCGTCGTTCTCGTTCACTTTCTCTTCTCTATCGTCTCGCAGCTTCTCCAATCTTCCTTGGACGACCAAGGATTTCTCCAACACAGCCCCGATCCCTACAACAACAACGATGCCTTGCACCGGAAAAACACTGCCATGGCCATTGAGATTATTGCGCGCTTTCTTCACCACAAACTCACTTCCAGAATCCTTGCATTGGTTCAACGAAACATGCCAGCGCATTGGGGACCTTTTCTACACCAGCTGCAGCAGCTTGCGGCAAACTCCACAGTGTTGAGGAGCTTGAAGCACGTCACTCCTGAGTCCCTTTTGCCTTTGGATTTCAATTCCACTACTGGAAATGGGATTAAGCTTCTGTCTTCTGACTGGAAAACAACACCTACGCTGGAACTCAATGCTGTCATGGCTGACTCTTGCGCAGTTCAGTCTCGTCACGATAGTTGGTCTTTGCTTTGGCTTCCTATTGATCTTATCCTTGAGGATGCAATGGATGGCAATCACGTCGCAGAAGCTAGTGCTGTTGAAGCACTCACTGGGTTGGTTAAGGCTTTGCAAGCAGTTAATGGTACTGCATGGCACAGTGCTTTTTTAGGCTTATGGATTGCAGCTCTACGGCTAGTTCAAAGGGAGAGGGATCCAGGAGAGGGGCCTGTACCTCGCCTTGATACCTGCTTGTCTATGTTATTGTGCATTACAACCCTTGTAGTTGCTAACCTTATTGAAGAAGAGGAAGGGAAACTTATTGAAGAAGCTGAACGTAGCCCTGCAAATCAAAGGATGGACAAGCAGGCTTTGGGAGAGCGTCATGGGGCATTGGTTACCAGCTTACAGCTATTGGGGGACTATGAGAATTTACTCACTCCTCCTCAATCTGTTATTTGGGGAGCCAATCAGGCTGCTGCCAAGGCTACCTTGTTTGTATCTGGACATAGTGGATACTTGGAACATACGAATGTGAATGACTTGCCCACAAACTGTTCTGGTAACTTAAGGCATCTCATTGTTGAGGCTTGTATTGCAAGACATCTGCTTGATACCTCAGCGTATTTCTGGCATGGTTATGTGAGCACACCTTTCAATCAGCTGCCTCATAGTATTCCTAACCATTTACCTAGCTGGTCATCATTGATGAAGGGATCACCACTAACTCCTCCATTGGTTAATGTCTTAGTTGCAACTCCTGCTTCTAGCTTAGCAGAGATTGAGAAAATATTTGAATTTGCAATCAATGGCTCGGATGAAGAAAAGATATCTGCTGCTACCATTCTTTGTGGGGCATCTTTAGTACGTGGTTGGAATGTGCAGGAACACATAGTTTTTTTCATCATAAATATGCTTTCACCTCCAGTTCCTCCTAAATATTCCGGGACAGAAAGTTATTTGATTAGCCATGCTCCTTTTTTGAATGTCTTTCTGGTGGGAATTTCATCTGTAGACAGTGTTCAGATATTCTCCCTACATGGCGTGGTTCCACTACTTGCAGCTGTCTTAATGCCAATATGCGAAGCTTTTGGATCATCTGTTCCTAATGTCTCATGGACTGCTGTAACTGGTGAAAAACTCACTTGTCATGCAGTGTTCTCTAATGCATTTATTCTCCTGCTGAGATTATGGCGGTTTGATCGTCCACCTGTTGAACATGTGATGGGGGGTGCAGCAACTCCAGCATTAGGATCACAATTAGGTCCTGAGTACCTTTTATTGGTTCGGAATTGTATGTTAGCAGCCTTTGGGAAATCACCAAGAGATCGAGTAAGGAGTAGAAGATTTTCAAAAATGATAAGATTTTCTCTCGAGCCTTTATTTATGGATTCCTTTCCTAAATTGAACATTTGGTATCGGCAACATCAAGAATGTATTGCATCCATCTGCAATACTCTTGCACCTGGAGGGCCAGTTTCTCAGATCGTTGAAGCACTACTTACCATGATGTGCAAGAAAATAAATCGAAGTGCTCAGTCATTGACACCTACAACTTCAGGAAGCAGCAATTCATCTCTTCCTTCATTGGATGATGCTTTGATGAAACTCAAAGTACCTGCATGGGACATCCTTGAAGCAACTCCATTTGTTCTTGATGCTGCTCTCACTGCTTGTGCTCATGGAAGTCTCTCTCCCCGTGAATTGGCTACAGGTCTCAAAGATCTTGCTGATTTTCTTCCGGCAACTTTGGGTACCATTGTAAGCTACTTATCATCTGAAGTAACACGTTGCATATGGAAGCCTGCTTTTATGAATGGAACTGATTGGCCTAGCCCTGCTGCAAATTTATCTATTGTTGAGCAACAAATCAAGAAAATTCTAGCGGCCACAGGTGTTGATGTTCCTAGCCTCGCTATAGATGGGAATGCTCCAGCTACACTTCCTTTGCCATTGGCGGCTCTTTTGAGTCTCACAATAACATATAAACTGGATAAATCTTGTGAGCGCTTTGTTATTTTGGCTGGCCCATCTTTGATTGCCCTTTCTTCTGGTTGCCCCTGGCCATGCATGCCCATTGTAGGTGCTTTGTGGGCTCAGAAGGTGAAGCGCTGGAGTGACTTTTTTGTATTCTCTGCTTCTGCAACTGTATTCCACCACAGCAGGGATGCCGTAGTTCAGCTTTTAAGAAGTTGCTTCGCCTCCACCCTTGGGCTTGGTTCTGCCTGCATTTATAACAATGGTGGTGTTGGCACCCTCCTTGGTCATGGCTTTGGTTCTCACTACTCTGGAGGGTTCACTCCGGTTGCTCCTGGGTTTCTCTACTTAAGAGTTTACAGGTCTATTAGAGATGTCATGTTCTTGACAGATGAAATTGTATCTCTTTTAATGCTTTCAGTTAGAGATATAGCAAATGGTGGGTTGCCCAAGGGTGAAGTGGAGAAGCTAAAGAAGACTAAGTATGGAATAAGATACGGACAGGTTTCTCTTGCTGCATCGATGACTCGCGTTAAGCACGCCGCTCTTCTTGGGGCTTCGATTCTTTGGATATCTGGTGGTTCAGGTTTGGTTCAATCTTTGATTACAGAAACTCTGCCTTCATGGTTTTTATCAGCCCAAGGGTTAGAGCAGGAAGGGGGAGAATCTGGAGTTGTGGTTGCTATGCTGAGAGGTTATGCACTTGCATGTTTTGCGGTACTTGGTGGGACTTTTGCCTGGGGTATCGACTCTTTGTCACCAGCATCAAAACGACGACCAAAGGTCCTTGAGATTCATTTAGAATTTCTTGCAAATGCACTAGATAGAAAAATATCTCTTCGCTGTGATTGTGCTACTTGGCGTGCATATGTGTCTGGGGTTATGAGCTTGATGGTGAGTTGCACGCCACTGTGGATTCAGGAACTTGATGTGGGTATATTGAAGAGAATGAGCAGCGGATTAAGACAGTTGAACGAAGAAGACTTGGCTCTGCGCCTATTAGAAATTAGAGGGACAAGCGTCATGGGTGAGGCAGCTGAAATGATCTGCCAAACTAGATTATAA
>Glyma19g00780.1 sequence type=predicted peptide gene model=Glyma19g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEVFQNMSEEEEEEEGSVMDGVMEVTKWAQEKKTDPLIWSIQVSSALNSGGVSLPSVELAQRLVSHICFENHVPITWKFLEKAMSVRLLPPLLVLSLLSARVVPQRRLHPSAYALYMDLLSRHAFSPHIHFPNYLKVMASIHHSLSLPPSNHHPHPGVVLVHFLFSIVSQLLQSSLDDQGFLQHSPDPYNNNDALHRKNTAMAIEIIARFLHHKLTSRILALVQRNMPAHWGPFLHQLQQLAANSTVLRSLKHVTPESLLPLDFNSTTGNGIKLLSSDWKTTPTLELNAVMADSCAVQSRHDSWSLLWLPIDLILEDAMDGNHVAEASAVEALTGLVKALQAVNGTAWHSAFLGLWIAALRLVQRERDPGEGPVPRLDTCLSMLLCITTLVVANLIEEEEGKLIEEAERSPANQRMDKQALGERHGALVTSLQLLGDYENLLTPPQSVIWGANQAAAKATLFVSGHSGYLEHTNVNDLPTNCSGNLRHLIVEACIARHLLDTSAYFWHGYVSTPFNQLPHSIPNHLPSWSSLMKGSPLTPPLVNVLVATPASSLAEIEKIFEFAINGSDEEKISAATILCGASLVRGWNVQEHIVFFIINMLSPPVPPKYSGTESYLISHAPFLNVFLVGISSVDSVQIFSLHGVVPLLAAVLMPICEAFGSSVPNVSWTAVTGEKLTCHAVFSNAFILLLRLWRFDRPPVEHVMGGAATPALGSQLGPEYLLLVRNCMLAAFGKSPRDRVRSRRFSKMIRFSLEPLFMDSFPKLNIWYRQHQECIASICNTLAPGGPVSQIVEALLTMMCKKINRSAQSLTPTTSGSSNSSLPSLDDALMKLKVPAWDILEATPFVLDAALTACAHGSLSPRELATGLKDLADFLPATLGTIVSYLSSEVTRCIWKPAFMNGTDWPSPAANLSIVEQQIKKILAATGVDVPSLAIDGNAPATLPLPLAALLSLTITYKLDKSCERFVILAGPSLIALSSGCPWPCMPIVGALWAQKVKRWSDFFVFSASATVFHHSRDAVVQLLRSCFASTLGLGSACIYNNGGVGTLLGHGFGSHYSGGFTPVAPGFLYLRVYRSIRDVMFLTDEIVSLLMLSVRDIANGGLPKGEVEKLKKTKYGIRYGQVSLAASMTRVKHAALLGASILWISGGSGLVQSLITETLPSWFLSAQGLEQEGGESGVVVAMLRGYALACFAVLGGTFAWGIDSLSPASKRRPKVLEIHLEFLANALDRKISLRCDCATWRAYVSGVMSLMVSCTPLWIQELDVGILKRMSSGLRQLNEEDLALRLLEIRGTSVMGEAAEMICQTRL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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