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Report for Sequence Feature Glyma19g00730

Feature Type:gene_model
Chromosome:Gm19
Start:461479
stop:462164
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g00730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75250AT Annotation by Michelle Graham. TAIR10: RAD-like 6 | chr1:28245073-28245453 REVERSE LENGTH=126 SoyBaseE_val: 1.00E-31ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR25040Panther FAMILY NOT NAMED JGI ISS
PTHR25040:SF164Panther JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_B9RBF6UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RBF6_RICCO SoyBaseE_val: 2.00E-33ISS
UniRef100_I1N5L7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N5L7_SOYBN SoyBaseE_val: 9.00E-40ISS

Expression Patterns of Glyma19g00730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00730 not represented in the dataset
Glyma19g00730 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g00730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g002100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g00730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g00730
>Glyma19g00730.2   sequence type=CDS   gene model=Glyma19g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCTTCTTCCTCTAGTACTAGTAGATGGACGGTTCAGGAAAACAAAGCGTTTGAAAGAGCTCTAGCAGTTTATGACAAGGACACTCCAAACCGTTGGTGCAACATTGCAAGGGCTGTTGGTGGAAAAACTCCAGAGGAAGTGAGGAGGCACTATGATCGTCTTGTGGAGGACATTAGGCGTATTGAGTCTGGCCAAGTTCCCTTTCCAATTTACAGGAACCTCCAAGATGGGGCATGA
Predicted protein sequences of Glyma19g00730
>Glyma19g00730.2   sequence type=predicted peptide   gene model=Glyma19g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSSSSSTSRWTVQENKAFERALAVYDKDTPNRWCNIARAVGGKTPEEVRRHYDRLVEDIRRIESGQVPFPIYRNLQDGA*






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