Report for Sequence Feature Glyma19g00720
Feature Type: gene_model
Chromosome: Gm19
Start: 455508
stop: 457545
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g00720
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G55270 AT
Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr1:20618333-20619925 REVERSE LENGTH=434
SoyBase E_val: 0 ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24412 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24412:SF247 Panther
JGI ISS
PF01344 PFAM
Kelch motif
JGI ISS
UniRef100_G7JCV8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7JCV8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1N5L6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5L6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g00720
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma19g00720 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g002200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g00720
Coding sequences of Glyma19g00720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g00720.1 sequence type=CDS gene model=Glyma19g00720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACAGAGTTATTCAACCTCCATTGGTTGATACAACTGCGTGTTTATGCAGAGTAGATACAGGTCTAAAAACCGTTGCTGGAGCAAAGAACAATGTCCCTGGAACAAAGTTCTGTCTTCAACCTGACATTAACCATCCATTCACCCAACTAGAAACAAAGTCGGCACATGGTGACAGAAGCCGTAATCAATCCCCTCTACTTCCAGGACTCCCTGATGATCTGGCTATTGCTTGGCTAATCCAAGTCACACGAGTTGAACACCGTAAACTTCGGCTAAGTCTTGGAGTCGCAGAAGAGTGGATATATGTCATTAAGAGGGACCAAGATGGAAAAATATCATGGCATGCCTTTGATCCTGTGTACCATCTATGGCAGCCCCTGCCACCTGTTCCTAAGGAATATTCTGGAGCTCTTGGTTTTGGCTGTGCTGTTCTCAATGGCTGTCACCTGTACCTGTTTGGAGGGAAGGACCCACTAAAGGGATCCATGAGACGTGTCATATTTTATAGTGCTAGGACAAATAAATGGCACTGTGCCCCAGATATGCTTCGTAGGCGGCACTTCTTTAGCTCCTGTGTCATAAACAATTGTCTGTATGTGGCTGGTGGGGAGAATGAGGGTGTGCACCGGTCCTTGAGATCAGCTGAAGTGTATGATCCCAACAAGAATAGATGGTCATTTATTTCAGATATGAGCACTGCAATGGTGCCTTTCATAGGAGTTGTCTATGATGGGAAGTGGTTCCTGAAGGGACTCGGTTCTCATCGGCAGGTTCTGAGTGAGGTCTACCAGCCAGAGAACGATAACCGGTACCCTATTTATGATGGAATGGTTTCTGGCTGGAGGAACCCTAGCTGTACCCTAAATGAAAAGCTCTATGCCTTAGACTGCAAGGACGGCTGCAAGATTCGGGTTTATGATGAGGTTGCTGATTCATGGAGCAAGCATATTGACAGTAAAATGCATTCGGGGAGCTCACGGGCTTTGGAGGATGCTGCTCTTGTCCCCCTGAATGGGAAACTCTGTATCATCCGTAATAATATGAGCATTTCTCTGGTTGATGTTTCAAAACTTGAAGATTTGAAAGGATCATCTCCTGAACAGTTATGGGAAACTATTGCTGGGAAAGGACAGTTCAAGACCTTGGTCACAAATCGGTGGTCTAGTCTTGCTGGGAGAAACCGACTCAAAAGTCACATAGTTCACTGTCAGGTTCTTCAAATTTAG
Predicted protein sequences of Glyma19g00720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g00720.1 sequence type=predicted peptide gene model=Glyma19g00720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDRVIQPPLVDTTACLCRVDTGLKTVAGAKNNVPGTKFCLQPDINHPFTQLETKSAHGDRSRNQSPLLPGLPDDLAIAWLIQVTRVEHRKLRLSLGVAEEWIYVIKRDQDGKISWHAFDPVYHLWQPLPPVPKEYSGALGFGCAVLNGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHCAPDMLRRRHFFSSCVINNCLYVAGGENEGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYDGKWFLKGLGSHRQVLSEVYQPENDNRYPIYDGMVSGWRNPSCTLNEKLYALDCKDGCKIRVYDEVADSWSKHIDSKMHSGSSRALEDAALVPLNGKLCIIRNNMSISLVDVSKLEDLKGSSPEQLWETIAGKGQFKTLVTNRWSSLAGRNRLKSHIVHCQVLQI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
