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Report for Sequence Feature Glyma19g00661

Feature Type:gene_model
Chromosome:Gm19
Start:420960
stop:422883
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g00661
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14470AT Annotation by Michelle Graham. TAIR10: GHMP kinase family protein | chr5:4663029-4664657 REVERSE LENGTH=366 SoyBaseE_val: 3.00E-11ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004335GO-mf Annotation by Michelle Graham. GO Molecular Function: galactokinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016773GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor SoyBaseN/AISS
UniRef100_B9S667UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S667_RICCO SoyBaseE_val: 2.00E-09ISS
UniRef100_I1N5L1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5L1_SOYBN SoyBaseE_val: 7.00E-33ISS

Expression Patterns of Glyma19g00661
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00661 not represented in the dataset
Glyma19g00661 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g00661
ParalogEvidenceComments
Glyma05g09130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g00661 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g002700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g00661
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g00661
>Glyma19g00661.2   sequence type=transcript   gene model=Glyma19g00661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAAAGTTTGTTTGATTATGATATCTATATATATAGGGAGGGTGATGGGGGAGATAGAGAAGAGAGGAGAAAGCAATGGGCATTGATAGTGATTCTGTGATATCTCACAAGGCGTATGCGAGGGTGGGTTTGCTCGGAAATCCAAGCGATGTGTATTACGGCAAAACGATATCGTTTAGCGTCGCCAACTTCTGCTCCACCGTCACGCTTGGTCCCTCCGACGAGCCCCTCCACGATCTTCGCGACCACAATTTCACTCCCTCCTACGCCATCAATATTCCTCGCCAGGTTAATGTTTGGAGGTGATGCCCTCGGGGATTTGAACCTAAAAATGGTAGAGGTTGCTAGACAGGTTGGAGCTGCATCAAAATTTACTCAAAAAGAAGGATTTGTGATACTACCTATTGAACCTTTTCCTTCTCGTCTAAATGAAATTGACTTGAAAACCTTGCAAATAAAGTAATCTGTTTGAGGGTTTGAAAAATAGTTCTCAACAAAATAAAATTTTCATTCACTTAAGACGAGTTATAGATTATTCAATCTGCCCACCATTTTCATATGGTGAGCTAGCACACGGGTTTAAAGCTGGTGGGAGTTGGCATACTCAAAGCGCAATGACAGTTTTGTTTTGGTTACAGACAGAATAAACAGCCAAGATTTTAATTATAGAAGGAATTTAGTTTTTTAATGTAAGTTTGTTCCTTTTTGTTGAGAGGGGATCGAACTTGGAAGTTGTTTTTGTTGGCTTTTGATGAGGGTGGATCTGAGAGTTTGGTTTGTGGTATATTTTGGTTTCGTATGTTTATGGTTGGGATTTGGATCATATGGGCGGTGTTATATAGTTTATGTCTAAGCTTTGGGGGTGCTTTTAGCAGCATATATGAGACCTACAGGATACCTTTGTAATTTGCATCGCTTGTCTGGCCAATTTCATACATCTTGTGCGTAAGTTGGTTAGGTTTAATAAGAGAAAAACTCAAAATCTGCCATTTGTTTTTTTGCAAAAAAAGAAAATTATGGATTGACTTTGTTAAATAAGAGCTGCACTTTTTTTTAAAGAGCTTATGTACGGAGATGTATGTTCAACAGTTACTG
Coding sequences of Glyma19g00661
>Glyma19g00661.1   sequence type=CDS   gene model=Glyma19g00661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAGGGTGGGTTTGCTCGGAAATCCAAGCGATGTGTATTACGGCAAAACGATATCGTTTAGCGTCGCCAACTTCTGCTCCACCGTCACGCTTGGTCCCTCCGACGAGCCCCTCCACGATCTTCGCGACCACAATTTCACTCCCTCCTACGCCATCAATATTCCTCGCCAGGTTAATGTTTGGAGGTGATGCCCTCGGGGATTTGAACCTAAAAATGGTAGAGGTTGCTAGACAGGTTGGAGCTGCATCAAAATTTACTCAAAAAGAAGGATTTGTGATACTACCTATTGAACCTTTTCCTTCTCGTCTAAATGAAATTGACTTGAAAACCTTGCAAATAAAGTAA

>Glyma19g00661.2   sequence type=CDS   gene model=Glyma19g00661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAGGGTGGGTTTGCTCGGAAATCCAAGCGATGTGTATTACGGCAAAACGATATCGTTTAGCGTCGCCAACTTCTGCTCCACCGTCACGCTTGGTCCCTCCGACGAGCCCCTCCACGATCTTCGCGACCACAATTTCACTCCCTCCTACGCCATCAATATTCCTCGCCAGGTTAATGTTTGGAGGTGATGCCCTCGGGGATTTGAACCTAAAAATGGTAGAGGTTGCTAGACAGGTTGGAGCTGCATCAAAATTTACTCAAAAAGAAGGATTTGTGATACTACCTATTGAACCTTTTCCTTCTCGTCTAAATGAAATTGACTTGAAAACCTTGCAAATAAAGTAA
Predicted protein sequences of Glyma19g00661
>Glyma19g00661.1   sequence type=predicted peptide   gene model=Glyma19g00661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGWVCSEIQAMCITAKRYRLASPTSAPPSRLVPPTSPSTIFATTISLPPTPSIFLARLMFGGDALGDLNLKMVEVARQVGAASKFTQKEGFVILPIEPFPSRLNEIDLKTLQIK*

>Glyma19g00661.2   sequence type=predicted peptide   gene model=Glyma19g00661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGWVCSEIQAMCITAKRYRLASPTSAPPSRLVPPTSPSTIFATTISLPPTPSIFLARLMFGGDALGDLNLKMVEVARQVGAASKFTQKEGFVILPIEPFPSRLNEIDLKTLQIK*






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