Glyma19g00640 - SoyBase

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Report for Sequence Feature Glyma19g00640

Feature Type:	gene_model
Chromosome:	Gm19
Start:	409713
stop:	414553
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g00640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01600	AT	Annotation by Michelle Graham. TAIR10: NAC domain containing protein 44 \| chr3:229365-231105 FORWARD LENGTH=370	SoyBase	E_val: 1.00E-91	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_B9GI76	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein, IPR003441 n=1 Tax=Populus trichocarpa RepID=B9GI76_POPTR	SoyBase	E_val: 4.00E-109	ISS
UniRef100_UPI000233F19A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F19A related cluster n=1 Tax=unknown RepID=UPI000233F19A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g00640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g00640

Paralog	Evidence	Comments
Glyma05g09110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g00640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g002900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g00640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g00640

Limit To All Plant Sequences

>Glyma19g00640.2   sequence type=CDS   gene model=Glyma19g00640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGGGAAGCAAGTAGCCACAGAGGTGGTAATAAGGTAATTTACCACAGTGTCTCTGTTTCGCTCGGTTTTCGGGGTGACAAGACAGCTTCTGTTTCGCAAAGGTTCAGAGTTTTCAGTCAATGGTGGGTGGGTGCTTCCAGATTCGGACTCAAAGAGTTTCTTTTCTTTCGCGCTCTCAACCAACACATTACTAGGAGCTGGCTTATTGACATTAGAGGATTTGCAAAGAAAGTGAAAGATACTACTCTGTCAACAGATGATCAAATGAAGGACTGTGGAACATACAGCGAATGCCCGAAATGTCATTATCATATTGATAACAGTAATGTTTCTCATGAGTGGCCTGGCTTTCCTGTTGGTGTAAAGTTTGATCCTTCTGATGTTGAGCTTTTAGAGCATTTAGCAGCAAAGTGCTGTATTGGAAACAGAGAGCCACACATGTTTATTCATCAGTTCATCCCAACTCTAGAAGGAGAGCAAGGTATTTGCTACACTCATCCACAAAATCTTCCAGGTGCTAAGACGGATGGGAGTAGTGTCCATTTCTTTCACAAAACAGCTAATGCATATGCTACTGGACGAAGGAAGCGTCGAAAGATTCATCATCAAGATGGTTTGACTGAGGAGCATGTACGCTGGCACAAGACTGGTAGGACCAAAGCTGTGACAGAAGATGGAGTGCATAAGGGTTTTAAGAAGATCATGGTTCTTTATATAAGATCTAAGAAAGGGACCAAGCCATATAAAACCAATTGGGTGATGCATCAGTACCATCTAGGGAGTGAAGTTGAGAAGGATGGTGAATATGTGGTTTCAAAAATATTTTATCAACAGCATAAGCAGAATGAGAAGAATGAGGAGAATACAATGGTTGAAGATTCTAACGTAGCAGCACAAGCAGGTCCAAGAACCCCAAAACCAAATCCCCCTACTCGACCTTGTACAGCCAAATGTGATGACAATTTTGATGAAAATGAACTTCTGCCATTCATCCAGGATGCCAGGCCTATACCTGGAGAATCACATGCACCACCATCTAATGTTCAAGATGAGGACCCTGCATGGTTGGCTGGTGAATCACAAGCTGACTGTGACTTCGATGGCTTGGAAGACATATTATTATGCAAGGAGATTTTACAATCATCTGCTCTCCTAAATCATTCTGGATTGACCTCCACTTTTAATGGCGATGCAAAGGCGAACAAGTTGGTTGCACCTGGAAACAATAATGATTATGGATCTTATGGAGTTTCTGTCCTGGACACACTGGAATTGGATACTCCTCCAGACTTTGATCTTTCTAATTTACAATTTGGTTCTCAAGACAGCACCCTTCAGTGGATTGACACACCATAA

Predicted protein sequences of Glyma19g00640

Limit To All Plant Sequences

>Glyma19g00640.2   sequence type=predicted peptide   gene model=Glyma19g00640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAWEASSHRGGNKVIYHSVSVSLGFRGDKTASVSQRFRVFSQWWVGASRFGLKEFLFFRALNQHITRSWLIDIRGFAKKVKDTTLSTDDQMKDCGTYSECPKCHYHIDNSNVSHEWPGFPVGVKFDPSDVELLEHLAAKCCIGNREPHMFIHQFIPTLEGEQGICYTHPQNLPGAKTDGSSVHFFHKTANAYATGRRKRRKIHHQDGLTEEHVRWHKTGRTKAVTEDGVHKGFKKIMVLYIRSKKGTKPYKTNWVMHQYHLGSEVEKDGEYVVSKIFYQQHKQNEKNEENTMVEDSNVAAQAGPRTPKPNPPTRPCTAKCDDNFDENELLPFIQDARPIPGESHAPPSNVQDEDPAWLAGESQADCDFDGLEDILLCKEILQSSALLNHSGLTSTFNGDAKANKLVAPGNNNDYGSYGVSVLDTLELDTPPDFDLSNLQFGSQDSTLQWIDTP*

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