SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g00610

Feature Type:gene_model
Chromosome:Gm19
Start:383364
stop:391615
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g00610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G27530AT Annotation by Michelle Graham. TAIR10: golgin candidate 6 | chr3:10193778-10199659 REVERSE LENGTH=914 SoyBaseE_val: 0ISS
GO:0000956GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process SoyBaseN/AISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0007033GO-bp Annotation by Michelle Graham. GO Biological Process: vacuole organization SoyBaseN/AISS
GO:0009639GO-bp Annotation by Michelle Graham. GO Biological Process: response to red or far red light SoyBaseN/AISS
GO:0009791GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic development SoyBaseN/AISS
GO:0032527GO-bp Annotation by Michelle Graham. GO Biological Process: protein exit from endoplasmic reticulum SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0048280GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle fusion with Golgi apparatus SoyBaseN/AISS
GO:0000139GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005795GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
KOG0946 KOG ER-Golgi vesicle-tethering protein p115 JGI ISS
PTHR10013Panther VESICLE DOCKING PROTEIN P115 JGI ISS
PF04869PFAM Uso1 / p115 like vesicle tethering protein, head region JGI ISS
PF04871PFAM Uso1 / p115 like vesicle tethering protein, C terminal region JGI ISS
UniRef100_B9S666UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vesicle docking protein P115, putative n=1 Tax=Ricinus communis RepID=B9S666_RICCO SoyBaseE_val: 0ISS
UniRef100_I1N5K6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5K6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g00610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g00610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g003200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g00610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g00610
>Glyma19g00610.1   sequence type=CDS   gene model=Glyma19g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGGATTTGATGTCTGGTTATAAGGGGGTTGTTGGGCTTCTTGTTGGCAACGAGAATTCCTCAAATGAAGATAGATATGTTGAGCGCTTGCTTGACCGGATAAGCAATGGTAAACTACCAGAGGACAGGAGAAATGCTATTACTGAGCTTCAGGCTGTTGTCTCAGAAAGTCAAGCTTTCCAGTTAGCATTTGGGGCAATGGGCTTTCCTATAATGCTAAGTGTCTTGAAGGAAGAACGTGATGATGTTGAGATGGTTCGTGGTGTCCTGGAAACACTTGTAAGTGCATTGACTCCTATTAATCATTCAAAAGGGGCAAGTAATGAAGTTCATCCAGCTTTGATGAACACTGATTTACTTTCTAGAGAAGCAGATTGTATCTCTCTTCTCCTAAGTTTGTTGGAAGAGGATGATTTCTATGTACGATATTATACTCTGCAACTATTGACTGCCCTTCTCACCAATTCTCCACAGAGGTTACAGGAAGCAATATTGACTATCCCTCGTGGTATAACTCGACTAATGGACATGCTTATGGATCGTGAGGTAATAAGGAATGAGGCATTATTGCTTCTTACTCATCTGACCCGTGAAGCTGAGGAGATTCAAAAAATTGTCGTCTTTGAAGGTGCATTTGAGAAGATTTTCAGTATCATAAGAGAGGAGGGAAATTCAGATGGTGGTGTTGTGGTACAGGACTGCCTTGAACTGTTGAACAATTTGCTTCGTAGCAATGCATCCAATCAGGTACTACTAAGAGAGACTGTAGGACTTGACTCATTGATATTGATTTTGAAGCTGAGAGGAAGTAGTTTCACTTTTAATCAACAAAAGACAATCAATCTACTCAGTGCATTAGAAACCATTAAATTGTTACTAAAGGGAGGTTCTGAGTCTGATCCTGGGAAAGATATGAATAAACAGACAAATAAGACTACTCTGGTTCAGAAAAAGATATTGGACCATTTGTTAATATTAGGGGTTGAAAGCCAATGGGTACCTGTTCCTGTTCGCTGTGCGGCAATGCGATGCATTGGTGATTTGATTGCTGGAGATTCAAAGAATCGTGATCTTCTTGCTAGCAAAGTTCTTGGAGAGGAGCCACACGTTGAACCTGCTCTGAACTCTATACTTAGAATCCTTTTGAGAACTTCTAGCATGCAAGAGTTCATTGCTGCTGATTATATTTTCAAAAGCTTTTGTGAGAAAAATGCTGATGGCCAATCAATGCTGGCGTCTACGCTAATTCCACAGCCATATTCCATGAATCATGCATTCCTCGAGGAGGATGTCAATATGTCTTTTGGCAGCATGCTATTACACAGTCTTACTTTGGGTGAAAATGGTGATCTTGAGACTTGTTGCAGAGCTGCTAGTGTTCTATCTCATATGTTGAAGGACCATCTCCAATGCAAGGAAAGGGTTTTAAGAATTGAAATTGAGGCAGCACCCATGCAATCTTTAGGAGCTCCAGAGCCACTAATGCATCGAATGGTGAAATATTTGGCTGTTGCTTCTTCCATGAAATTCCATGATGGAAAGTCTAGTACATCAGGAAACTCTTATGTTCAGGCCATTATCTTGAAATTACTGATTACCTGGCTAGCAGATTGCCCCAGTGCAGTGCACTGCTTCCTAGATGCTCGCCCCCACCTTACTTATCTTCTTGAGCTGGTATCAAATTCTTCTGAAACAGTGTGTATAAGGGGTTTTGCGGCAGTTGTCTTGGGTGAATGTGTGATCTATAACAAATCCACTGACCGTGGAAAAGATGCATTTGCCATTGTTGACACAATAAGTCAGAAAATTGGGCTTAGTTCATACTTTTTAAAATTTGATGAGATGCAGAAAAGTTCCATTTTTTCTAGTTTGGAGTCATCCCTGACCCACAGATCATTCGCTAGATCTTCAGCAGCTAGCATGGCAGATATAGAAGATGTAGATGGGAATGATTTGTCAGAAAAGAAAAATCTGGACCATCCAATTCTATCTTCAATCTTGGATTCTAACTTCATGAACCTTGTCAAAAGTCTAGAGGCAGATATTAGAGAACAGATTGTGGAGGTTTATAGCCGTCCAAAAATGAAGGTGGCAGTAGTGCCAGCAGAATTAGAGCAGAGGAGTGGTGAAAGTGATGCTGAGTATATAAAGCGGCTGAAGGTTTTTGTTGAGAAACAGTGCTCTGAGATACAGGATCTTGTTCTTCGAAATGCTTCTATGGCTGAGGACCTGGCTAAGACAGGTAGTACTTTGCAGCCTGAGCAAAGAGTGAGTGGGGGCTCAGATAGAGTCCCAATTGAGACACTGCATAGAGATCTCCAAGAAGCATCTCAAAGATTGGAGATGCTTAAGGCAGAAAAGGCTAAAGTTGAATCTGAGGCGATAATGTATCGGAATTTAGCTGGAAAGACAGAAGCTGATCTAAGGAGTCTGTCTGATGCCTACAATAGTCTGGAGCAATCTAACTTGCTACTGGAGAATGAGGTGAAAGCACTGAAGAGAGAAGGGCACTCAACATTCCCAGATGTGGATGCAATAAAAGCTGAAGCAAGGGAAGAAGCACAGAAGGAGAGTGAGGGTGAGCTGAATGATCTGCTTGTTTGCCTTGGGCAAGAACAAAGCAAGGTAGAAAGACTTAGTGCTAGATTGTTGGAGTTGGGAGAGGATGTTGACATACTGCTTGAAGGCATTGGTGATGATGCTGGGGCTGCTGAAGATGGTGAAGATGAGGAAGATGATGAATAA
Predicted protein sequences of Glyma19g00610
>Glyma19g00610.1   sequence type=predicted peptide   gene model=Glyma19g00610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMDLMSGYKGVVGLLVGNENSSNEDRYVERLLDRISNGKLPEDRRNAITELQAVVSESQAFQLAFGAMGFPIMLSVLKEERDDVEMVRGVLETLVSALTPINHSKGASNEVHPALMNTDLLSREADCISLLLSLLEEDDFYVRYYTLQLLTALLTNSPQRLQEAILTIPRGITRLMDMLMDREVIRNEALLLLTHLTREAEEIQKIVVFEGAFEKIFSIIREEGNSDGGVVVQDCLELLNNLLRSNASNQVLLRETVGLDSLILILKLRGSSFTFNQQKTINLLSALETIKLLLKGGSESDPGKDMNKQTNKTTLVQKKILDHLLILGVESQWVPVPVRCAAMRCIGDLIAGDSKNRDLLASKVLGEEPHVEPALNSILRILLRTSSMQEFIAADYIFKSFCEKNADGQSMLASTLIPQPYSMNHAFLEEDVNMSFGSMLLHSLTLGENGDLETCCRAASVLSHMLKDHLQCKERVLRIEIEAAPMQSLGAPEPLMHRMVKYLAVASSMKFHDGKSSTSGNSYVQAIILKLLITWLADCPSAVHCFLDARPHLTYLLELVSNSSETVCIRGFAAVVLGECVIYNKSTDRGKDAFAIVDTISQKIGLSSYFLKFDEMQKSSIFSSLESSLTHRSFARSSAASMADIEDVDGNDLSEKKNLDHPILSSILDSNFMNLVKSLEADIREQIVEVYSRPKMKVAVVPAELEQRSGESDAEYIKRLKVFVEKQCSEIQDLVLRNASMAEDLAKTGSTLQPEQRVSGGSDRVPIETLHRDLQEASQRLEMLKAEKAKVESEAIMYRNLAGKTEADLRSLSDAYNSLEQSNLLLENEVKALKREGHSTFPDVDAIKAEAREEAQKESEGELNDLLVCLGQEQSKVERLSARLLELGEDVDILLEGIGDDAGAAEDGEDEEDDE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo