SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G27530 | AT | Annotation by Michelle Graham. TAIR10: golgin candidate 6 | chr3:10193778-10199659 REVERSE LENGTH=914 | SoyBase | E_val: 0 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
| GO:0009639 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red or far red light | SoyBase | N/A | ISS |
| GO:0009791 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic development | SoyBase | N/A | ISS |
| GO:0032527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein exit from endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0048280 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle fusion with Golgi apparatus | SoyBase | N/A | ISS |
| GO:0000139 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005795 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| KOG0946 | KOG | ER-Golgi vesicle-tethering protein p115 | JGI | ISS | |
| PTHR10013 | Panther | VESICLE DOCKING PROTEIN P115 | JGI | ISS | |
| PF04869 | PFAM | Uso1 / p115 like vesicle tethering protein, head region | JGI | ISS | |
| PF04871 | PFAM | Uso1 / p115 like vesicle tethering protein, C terminal region | JGI | ISS | |
| UniRef100_B9S666 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vesicle docking protein P115, putative n=1 Tax=Ricinus communis RepID=B9S666_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N5K6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5K6_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma19g00610 not represented in the dataset |
Glyma19g00610 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g003200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g00610.1 sequence type=CDS gene model=Glyma19g00610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGATGGATTTGATGTCTGGTTATAAGGGGGTTGTTGGGCTTCTTGTTGGCAACGAGAATTCCTCAAATGAAGATAGATATGTTGAGCGCTTGCTTGACCGGATAAGCAATGGTAAACTACCAGAGGACAGGAGAAATGCTATTACTGAGCTTCAGGCTGTTGTCTCAGAAAGTCAAGCTTTCCAGTTAGCATTTGGGGCAATGGGCTTTCCTATAATGCTAAGTGTCTTGAAGGAAGAACGTGATGATGTTGAGATGGTTCGTGGTGTCCTGGAAACACTTGTAAGTGCATTGACTCCTATTAATCATTCAAAAGGGGCAAGTAATGAAGTTCATCCAGCTTTGATGAACACTGATTTACTTTCTAGAGAAGCAGATTGTATCTCTCTTCTCCTAAGTTTGTTGGAAGAGGATGATTTCTATGTACGATATTATACTCTGCAACTATTGACTGCCCTTCTCACCAATTCTCCACAGAGGTTACAGGAAGCAATATTGACTATCCCTCGTGGTATAACTCGACTAATGGACATGCTTATGGATCGTGAGGTAATAAGGAATGAGGCATTATTGCTTCTTACTCATCTGACCCGTGAAGCTGAGGAGATTCAAAAAATTGTCGTCTTTGAAGGTGCATTTGAGAAGATTTTCAGTATCATAAGAGAGGAGGGAAATTCAGATGGTGGTGTTGTGGTACAGGACTGCCTTGAACTGTTGAACAATTTGCTTCGTAGCAATGCATCCAATCAGGTACTACTAAGAGAGACTGTAGGACTTGACTCATTGATATTGATTTTGAAGCTGAGAGGAAGTAGTTTCACTTTTAATCAACAAAAGACAATCAATCTACTCAGTGCATTAGAAACCATTAAATTGTTACTAAAGGGAGGTTCTGAGTCTGATCCTGGGAAAGATATGAATAAACAGACAAATAAGACTACTCTGGTTCAGAAAAAGATATTGGACCATTTGTTAATATTAGGGGTTGAAAGCCAATGGGTACCTGTTCCTGTTCGCTGTGCGGCAATGCGATGCATTGGTGATTTGATTGCTGGAGATTCAAAGAATCGTGATCTTCTTGCTAGCAAAGTTCTTGGAGAGGAGCCACACGTTGAACCTGCTCTGAACTCTATACTTAGAATCCTTTTGAGAACTTCTAGCATGCAAGAGTTCATTGCTGCTGATTATATTTTCAAAAGCTTTTGTGAGAAAAATGCTGATGGCCAATCAATGCTGGCGTCTACGCTAATTCCACAGCCATATTCCATGAATCATGCATTCCTCGAGGAGGATGTCAATATGTCTTTTGGCAGCATGCTATTACACAGTCTTACTTTGGGTGAAAATGGTGATCTTGAGACTTGTTGCAGAGCTGCTAGTGTTCTATCTCATATGTTGAAGGACCATCTCCAATGCAAGGAAAGGGTTTTAAGAATTGAAATTGAGGCAGCACCCATGCAATCTTTAGGAGCTCCAGAGCCACTAATGCATCGAATGGTGAAATATTTGGCTGTTGCTTCTTCCATGAAATTCCATGATGGAAAGTCTAGTACATCAGGAAACTCTTATGTTCAGGCCATTATCTTGAAATTACTGATTACCTGGCTAGCAGATTGCCCCAGTGCAGTGCACTGCTTCCTAGATGCTCGCCCCCACCTTACTTATCTTCTTGAGCTGGTATCAAATTCTTCTGAAACAGTGTGTATAAGGGGTTTTGCGGCAGTTGTCTTGGGTGAATGTGTGATCTATAACAAATCCACTGACCGTGGAAAAGATGCATTTGCCATTGTTGACACAATAAGTCAGAAAATTGGGCTTAGTTCATACTTTTTAAAATTTGATGAGATGCAGAAAAGTTCCATTTTTTCTAGTTTGGAGTCATCCCTGACCCACAGATCATTCGCTAGATCTTCAGCAGCTAGCATGGCAGATATAGAAGATGTAGATGGGAATGATTTGTCAGAAAAGAAAAATCTGGACCATCCAATTCTATCTTCAATCTTGGATTCTAACTTCATGAACCTTGTCAAAAGTCTAGAGGCAGATATTAGAGAACAGATTGTGGAGGTTTATAGCCGTCCAAAAATGAAGGTGGCAGTAGTGCCAGCAGAATTAGAGCAGAGGAGTGGTGAAAGTGATGCTGAGTATATAAAGCGGCTGAAGGTTTTTGTTGAGAAACAGTGCTCTGAGATACAGGATCTTGTTCTTCGAAATGCTTCTATGGCTGAGGACCTGGCTAAGACAGGTAGTACTTTGCAGCCTGAGCAAAGAGTGAGTGGGGGCTCAGATAGAGTCCCAATTGAGACACTGCATAGAGATCTCCAAGAAGCATCTCAAAGATTGGAGATGCTTAAGGCAGAAAAGGCTAAAGTTGAATCTGAGGCGATAATGTATCGGAATTTAGCTGGAAAGACAGAAGCTGATCTAAGGAGTCTGTCTGATGCCTACAATAGTCTGGAGCAATCTAACTTGCTACTGGAGAATGAGGTGAAAGCACTGAAGAGAGAAGGGCACTCAACATTCCCAGATGTGGATGCAATAAAAGCTGAAGCAAGGGAAGAAGCACAGAAGGAGAGTGAGGGTGAGCTGAATGATCTGCTTGTTTGCCTTGGGCAAGAACAAAGCAAGGTAGAAAGACTTAGTGCTAGATTGTTGGAGTTGGGAGAGGATGTTGACATACTGCTTGAAGGCATTGGTGATGATGCTGGGGCTGCTGAAGATGGTGAAGATGAGGAAGATGATGAATAA
>Glyma19g00610.1 sequence type=predicted peptide gene model=Glyma19g00610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKMDLMSGYKGVVGLLVGNENSSNEDRYVERLLDRISNGKLPEDRRNAITELQAVVSESQAFQLAFGAMGFPIMLSVLKEERDDVEMVRGVLETLVSALTPINHSKGASNEVHPALMNTDLLSREADCISLLLSLLEEDDFYVRYYTLQLLTALLTNSPQRLQEAILTIPRGITRLMDMLMDREVIRNEALLLLTHLTREAEEIQKIVVFEGAFEKIFSIIREEGNSDGGVVVQDCLELLNNLLRSNASNQVLLRETVGLDSLILILKLRGSSFTFNQQKTINLLSALETIKLLLKGGSESDPGKDMNKQTNKTTLVQKKILDHLLILGVESQWVPVPVRCAAMRCIGDLIAGDSKNRDLLASKVLGEEPHVEPALNSILRILLRTSSMQEFIAADYIFKSFCEKNADGQSMLASTLIPQPYSMNHAFLEEDVNMSFGSMLLHSLTLGENGDLETCCRAASVLSHMLKDHLQCKERVLRIEIEAAPMQSLGAPEPLMHRMVKYLAVASSMKFHDGKSSTSGNSYVQAIILKLLITWLADCPSAVHCFLDARPHLTYLLELVSNSSETVCIRGFAAVVLGECVIYNKSTDRGKDAFAIVDTISQKIGLSSYFLKFDEMQKSSIFSSLESSLTHRSFARSSAASMADIEDVDGNDLSEKKNLDHPILSSILDSNFMNLVKSLEADIREQIVEVYSRPKMKVAVVPAELEQRSGESDAEYIKRLKVFVEKQCSEIQDLVLRNASMAEDLAKTGSTLQPEQRVSGGSDRVPIETLHRDLQEASQRLEMLKAEKAKVESEAIMYRNLAGKTEADLRSLSDAYNSLEQSNLLLENEVKALKREGHSTFPDVDAIKAEAREEAQKESEGELNDLLVCLGQEQSKVERLSARLLELGEDVDILLEGIGDDAGAAEDGEDEEDDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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