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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g00550

Feature Type:gene_model
Chromosome:Gm19
Start:324976
stop:329473
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40510AT Annotation by Michelle Graham. TAIR10: Sucrase/ferredoxin-like family protein | chr5:16229277-16230798 FORWARD LENGTH=333 SoyBaseE_val: 2.00E-109ISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0015698GO-bp Annotation by Michelle Graham. GO Biological Process: inorganic anion transport SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF06999PFAM Sucrase/ferredoxin-like JGI ISS
UniRef100_D7LPI2UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT3g27570/MMJ24_12 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LPI2_ARALL SoyBaseE_val: 5.00E-109ISS
UniRef100_I1N5J9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5J9_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00550 not represented in the dataset

Glyma19g00550 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g003700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g00550.1   sequence type=CDS   gene model=Glyma19g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTTGTTATCTCATACAATAATCACTCCCATTCTCTCTCGTAACAACCGTCGTTGCTTTTCTCTCATGGCTGCTTCCGCCGCATTCGACGACGCCAAGCACGGCTTTTCTCGGCCGGAGATGTACAAGGAAAACCTCGCCGGCACCTTGGACGCCTACGACCGCCACGTGTTCCTCTGCTACAAGAACCACCTCGCCTGGCCGCCTCGCCTCGAGGCCTCCGACGCCGATCCTCTTCCCAAGCGCGTCGCCACCGTCTGGAGAGCTCGCAAAAACGACATCGCCGTCAAGCAGACGAAAATCACGGTGTGCGAGGCGCGTGAGGAGGCAGGTTTCTCCGACGGTGATGCGTTGATTTTCCCCGACATGATCAAATACAGGGGTGTGGAGGAGTCAAACGTGGATGTGTTTTTTAATGATGTGATAGTGAGTGGTAAAGAGTGGAGTGGTGGAAAGCAAGGGAAGGGGGTGTTGAAGGGTTCGCATATATTTGTATGTGCTCATGGAAGTCGTGATGTGCGGTGCGGTGTTTGTGGGCCGGTTCTGATGGACAAGTTCAATGAGGAAATTCAGCTGAGGGGATTGAAGGATCAGATATCTGTTTTGGCCTGTTCTCATATCGGTGGCCATAAGTATGCTGGGAATGTAATCATATTCTCTCCAGGATCAGATGGAAAAATCATGGGTCATTGGTATGGCTATGTTACTCCGGATGACGTGGCAGCCTTGTTGGACCGACAAATTGCCAAGGGAGAGGTCATAAAAAAACTTTGGAGGGGTCAAATGGGGCCACCCGGTGCCGAAATCAAGGTAGCAGATGACCATAAACTTGCTAACGGAGTTTATAATAACAAGGCCAATCTAAGCAACAATGAAAATGTTACAGGATGCTGTCAGGGTGTTAATGGGGTTTCTTGCTGCAGGACTGCAAGTTTTGATGATAAAACCGCAGAAGCATATAAAAAGCAAGGGAGCAATAATATAAGTTGGTGTTTGCCTGTATTAAAGAAGCGTGACATTCTTACGGCTGGTGGTATACTTGGAGCTTTGGCAGCTGTTGCTGTAGCTTTCAGATTTTACAGAAGGGCAAGTTGA

>Glyma19g00550.1   sequence type=predicted peptide   gene model=Glyma19g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLLSHTIITPILSRNNRRCFSLMAASAAFDDAKHGFSRPEMYKENLAGTLDAYDRHVFLCYKNHLAWPPRLEASDADPLPKRVATVWRARKNDIAVKQTKITVCEAREEAGFSDGDALIFPDMIKYRGVEESNVDVFFNDVIVSGKEWSGGKQGKGVLKGSHIFVCAHGSRDVRCGVCGPVLMDKFNEEIQLRGLKDQISVLACSHIGGHKYAGNVIIFSPGSDGKIMGHWYGYVTPDDVAALLDRQIAKGEVIKKLWRGQMGPPGAEIKVADDHKLANGVYNNKANLSNNENVTGCCQGVNGVSCCRTASFDDKTAEAYKKQGSNNISWCLPVLKKRDILTAGGILGALAAVAVAFRFYRRAS*







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