|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G47750 | AT | Annotation by Michelle Graham. TAIR10: D6 protein kinase like 2 | chr5:19339947-19341864 REVERSE LENGTH=586 | SoyBase | E_val: 0 | ISS |
GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
KOG0610 | KOG | Putative serine/threonine protein kinase | JGI | ISS | |
PTHR24351 | Panther | RIBOSOMAL PROTEIN S6 KINASE | JGI | ISS | |
PTHR24351:SF88 | Panther | JGI | ISS | ||
PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
UniRef100_I1N5J7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N5J7_SOYBN | SoyBase | E_val: 0 | ISS |
UniRef100_P15792 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase PVPK-1 n=1 Tax=Phaseolus vulgaris RepID=KPK1_PHAVU | SoyBase | E_val: 0 | ISS |
Glyma19g00540 not represented in the dataset |
Glyma19g00540 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.19g003800 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g00540.3 sequence type=transcript gene model=Glyma19g00540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATCGGATCTGAGGCAAAGAGGGTGTTCAGAATCAGTGTTCACTCTTTGTTCAGTGGTGTCTTGGTGCTCAAAGACTCCCAAAGTTACTTCCCTTTCTGTTTTCTTTCTTCTTCTCAACATGCTTGTTCCTCCACCACCACCACCCATGAACAAATGAAAACAACATTTCTTACTCTTCATCCACATTGCCATTTCTCTTATCTCATCAGACATTTTTGTAGGAGATTCTGTAATTAAAGAGCTCGTTGAATGAGTACATATTGGTAATTCACTGTGCTGAGTTGGATTTTTTAAGCCTGTTCAGATACCCTTCATGGAGTCACCTGTTAATGGAGTAGATTCCTTATCAGAGGTTCAGAATTCAGTTTCTGGGGTACATCATGATCTTCTTTCATCTGGGACTCCCCGTCCTTCACGGCCTCCCTTGAGAGCATCTAGAAACCATCAAACCAAGACCATCCACCATCAAAACAGCCATGTAATTAATCAAAAGCATTCCTATCAAGAGGGAAACAATGTGGAGCATGAAAGGTTGCCAACAAAATTGTGCAGCAAGCATCAACCACTTGATGATTCCAAGAATTGTGAGTCAAGTGATGTGTTAGAATCTGACAATTGCATCTTAGGGCCGTCAAAACGAGTTGTGGCTAATCATGCAAGGAGTTACTGCCAGTCAGAGGTTACTTTCTGTCCAAGTCCTCAGAGTAGTTTCTATTCAGCCACTGTCTATTCGGAAGCGAAACAAAGTTTCACCAACACTGAGGTCAGTGAGTGTGCTAGTGTTGACAAGTCTTGTGTAAGTGGAGAAATGGCAAATTCCTGTGATTTTAATGAGAGCAGGAAGACCAGCATCTGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGTCGTGTATAAACCACACAAGGCCAATGACATAAGATGGGAAGCGATTCAAGCTGTCCGAGCTCGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGCAATTGGGGTGTGGAGACATAGGGGTAGTGTATCTAGTTGAATTGAGTGGCACAAGAACTTCTTTTGCCATGAAGATCATGGACAAGACCAAGCTGGCGAATCGCAAGAAGGTTCTGAGGTCTCAGACCGAGAGAGAGATATTGCAGTCTTTAGATCACCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAGATATTTTCTTGCTTGGTAATGGAGTTCTGCCCCGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCAGGGAAGTATTTTTCGGAGCATGCCGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACCGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTAGTAAAGTCATCAATTAACAGCTTGGAGACAAAAAGCTCAGGATACTGCATTCAGCCTGCTTGCATTGAGCCAACTTGTGTAATGCAGCCAGACTGCATCCAACCAGCATGCTTCACGCCACGCTTTCTATCCGGAAAATCCAAGAAAGACAAAAAGTTCAAACCAAAGAATGACATGCATCACCAAGTGACCCCTCTTCCTGAGCTAATTGCTGAGCCAACAAATGCCAGATCAATGTCCTTTGTGGGGACACACGAGTACTTGGCGCCGGAGATCATCAAGGGTGAAGGGCACGGAAGTGCCGTGGACTGGTGGACATTTGGGATATTCTTGTATGAGCTTTTGTTTGGCAGAACACCATTCAAAGGTTCAGTGAATCGTGCAACACTGTTTAACGTAATTGGGCAGCCTCTACGGTTTCCAGAATCTCCTAGTGTCAGCTTTGCTGCCAGGGACTTGATCAGGGGCTTGCTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGTGGTGCGACAGAGATAAAACAGCATCCATTCTTTCAGAATGTTAACTGGGCACTGATCCGTTGTGCAAATCCTCCAGAGGTGCCAAGACAGGTTATGAAGCTTGCTCAAACGGAAAAGGAGCTTGGTGTGAAGCCTTCGGGTAATTATTTAGATATTGATTTCTTTTGATACTTATGTGCGACTATGTCCATTTTCTCCTTTGGACTAGTTTCCAGTTTCCATCTCTCATTTGTGGTGTTTCATGTTTGTGTGTCCAACATGGTTCTTTCCTTTGCCTAAAAAGGATGCTATGTTCTCAACTACATTGTTGATCAGCACTTATAATTGTCCATGCAAAACTGTTGTAAGAAATTTCACATGCTTTATATTGAGTAACAAAGTTTCTGTTCTCTTGTTTACTTCTACTCCTTTCAGAAAACTGCTTTGGATGAATGTTATGGTAAAACAAATA
>Glyma19g00540.1 sequence type=CDS gene model=Glyma19g00540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCACCTGTTAATGGAGTAGATTCCTTATCAGAGGTTCAGAATTCAGTTTCTGGGGTACATCATGATCTTCTTTCATCTGGGACTCCCCGTCCTTCACGGCCTCCCTTGAGAGCATCTAGAAACCATCAAACCAAGACCATCCACCATCAAAACAGCCATGTAATTAATCAAAAGCATTCCTATCAAGAGGGAAACAATGTGGAGCATGAAAGGTTGCCAACAAAATTGTGCAGCAAGCATCAACCACTTGATGATTCCAAGAATTGTGAGTCAAGTGATGTGTTAGAATCTGACAATTGCATCTTAGGGCCGTCAAAACGAGTTGTGGCTAATCATGCAAGGAGTTACTGCCAGTCAGAGGTTACTTTCTGTCCAAGTCCTCAGAGTAGTTTCTATTCAGCCACTGTCTATTCGGAAGCGAAACAAAGTTTCACCAACACTGAGGTCAGTGAGTGTGCTAGTGTTGACAAGTCTTGTGTAAGTGGAGAAATGGCAAATTCCTGTGATTTTAATGAGAGCAGGAAGACCAGCATCTGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGTCGTGTATAAACCACACAAGGCCAATGACATAAGATGGGAAGCGATTCAAGCTGTCCGAGCTCGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGCAATTGGGGTGTGGAGACATAGGGGTAGTGTATCTAGTTGAATTGAGTGGCACAAGAACTTCTTTTGCCATGAAGATCATGGACAAGACCAAGCTGGCGAATCGCAAGAAGGTTCTGAGGTCTCAGACCGAGAGAGAGATATTGCAGTCTTTAGATCACCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAGATATTTTCTTGCTTGGTAATGGAGTTCTGCCCCGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCAGGGAAGTATTTTTCGGAGCATGCCGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACCGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTAGTAAAGTCATCAATTAACAGCTTGGAGACAAAAAGCTCAGGATACTGCATTCAGCCTGCTTGCATTGAGCCAACTTGTGTAATGCAGCCAGACTGCATCCAACCAGCATGCTTCACGCCACGCTTTCTATCCGGAAAATCCAAGAAAGACAAAAAGTTCAAACCAAAGAATGACATGCATCACCAAGTGACCCCTCTTCCTGAGCTAATTGCTGAGCCAACAAATGCCAGATCAATGTCCTTTGTGGGGACACACGAGTACTTGGCGCCGGAGATCATCAAGGGTGAAGGGCACGGAAGTGCCGTGGACTGGTGGACATTTGGGATATTCTTGTATGAGCTTTTGTTTGGCAGAACACCATTCAAAGGTTCAGTGAATCGTGCAACACTGTTTAACGTAATTGGGCAGCCTCTACGGTTTCCAGAATCTCCTAGTGTCAGCTTTGCTGCCAGGGACTTGATCAGGGGCTTGCTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGTGGTGCGACAGAGATAAAACAGCATCCATTCTTTCAGAATGTTAACTGGGCACTGATCCGTTGTGCAAATCCTCCAGAGGTGCCAAGACAGGTTATGAAGCTTGCTCAAACGGAAAAGGAGCTTGGTGTGAAGCCTTCGGGTAATTATTTAGATATTGATTTCTTTTGA >Glyma19g00540.3 sequence type=CDS gene model=Glyma19g00540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCACCTGTTAATGGAGTAGATTCCTTATCAGAGGTTCAGAATTCAGTTTCTGGGGTACATCATGATCTTCTTTCATCTGGGACTCCCCGTCCTTCACGGCCTCCCTTGAGAGCATCTAGAAACCATCAAACCAAGACCATCCACCATCAAAACAGCCATGTAATTAATCAAAAGCATTCCTATCAAGAGGGAAACAATGTGGAGCATGAAAGGTTGCCAACAAAATTGTGCAGCAAGCATCAACCACTTGATGATTCCAAGAATTGTGAGTCAAGTGATGTGTTAGAATCTGACAATTGCATCTTAGGGCCGTCAAAACGAGTTGTGGCTAATCATGCAAGGAGTTACTGCCAGTCAGAGGTTACTTTCTGTCCAAGTCCTCAGAGTAGTTTCTATTCAGCCACTGTCTATTCGGAAGCGAAACAAAGTTTCACCAACACTGAGGTCAGTGAGTGTGCTAGTGTTGACAAGTCTTGTGTAAGTGGAGAAATGGCAAATTCCTGTGATTTTAATGAGAGCAGGAAGACCAGCATCTGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGTCGTGTATAAACCACACAAGGCCAATGACATAAGATGGGAAGCGATTCAAGCTGTCCGAGCTCGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGCAATTGGGGTGTGGAGACATAGGGGTAGTGTATCTAGTTGAATTGAGTGGCACAAGAACTTCTTTTGCCATGAAGATCATGGACAAGACCAAGCTGGCGAATCGCAAGAAGGTTCTGAGGTCTCAGACCGAGAGAGAGATATTGCAGTCTTTAGATCACCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAGATATTTTCTTGCTTGGTAATGGAGTTCTGCCCCGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCAGGGAAGTATTTTTCGGAGCATGCCGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACCGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTAGTAAAGTCATCAATTAACAGCTTGGAGACAAAAAGCTCAGGATACTGCATTCAGCCTGCTTGCATTGAGCCAACTTGTGTAATGCAGCCAGACTGCATCCAACCAGCATGCTTCACGCCACGCTTTCTATCCGGAAAATCCAAGAAAGACAAAAAGTTCAAACCAAAGAATGACATGCATCACCAAGTGACCCCTCTTCCTGAGCTAATTGCTGAGCCAACAAATGCCAGATCAATGTCCTTTGTGGGGACACACGAGTACTTGGCGCCGGAGATCATCAAGGGTGAAGGGCACGGAAGTGCCGTGGACTGGTGGACATTTGGGATATTCTTGTATGAGCTTTTGTTTGGCAGAACACCATTCAAAGGTTCAGTGAATCGTGCAACACTGTTTAACGTAATTGGGCAGCCTCTACGGTTTCCAGAATCTCCTAGTGTCAGCTTTGCTGCCAGGGACTTGATCAGGGGCTTGCTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGTGGTGCGACAGAGATAAAACAGCATCCATTCTTTCAGAATGTTAACTGGGCACTGATCCGTTGTGCAAATCCTCCAGAGGTGCCAAGACAGGTTATGAAGCTTGCTCAAACGGAAAAGGAGCTTGGTGTGAAGCCTTCGGGTAATTATTTAGATATTGATTTCTTTTGA
>Glyma19g00540.1 sequence type=predicted peptide gene model=Glyma19g00540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESPVNGVDSLSEVQNSVSGVHHDLLSSGTPRPSRPPLRASRNHQTKTIHHQNSHVINQKHSYQEGNNVEHERLPTKLCSKHQPLDDSKNCESSDVLESDNCILGPSKRVVANHARSYCQSEVTFCPSPQSSFYSATVYSEAKQSFTNTEVSECASVDKSCVSGEMANSCDFNESRKTSICRASTGSDASDESSTSSLSSVVYKPHKANDIRWEAIQAVRARDGMLEMRHFRLLKQLGCGDIGVVYLVELSGTRTSFAMKIMDKTKLANRKKVLRSQTEREILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSINSLETKSSGYCIQPACIEPTCVMQPDCIQPACFTPRFLSGKSKKDKKFKPKNDMHHQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSVNRATLFNVIGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRQVMKLAQTEKELGVKPSGNYLDIDFF* >Glyma19g00540.3 sequence type=predicted peptide gene model=Glyma19g00540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESPVNGVDSLSEVQNSVSGVHHDLLSSGTPRPSRPPLRASRNHQTKTIHHQNSHVINQKHSYQEGNNVEHERLPTKLCSKHQPLDDSKNCESSDVLESDNCILGPSKRVVANHARSYCQSEVTFCPSPQSSFYSATVYSEAKQSFTNTEVSECASVDKSCVSGEMANSCDFNESRKTSICRASTGSDASDESSTSSLSSVVYKPHKANDIRWEAIQAVRARDGMLEMRHFRLLKQLGCGDIGVVYLVELSGTRTSFAMKIMDKTKLANRKKVLRSQTEREILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSINSLETKSSGYCIQPACIEPTCVMQPDCIQPACFTPRFLSGKSKKDKKFKPKNDMHHQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSVNRATLFNVIGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRQVMKLAQTEKELGVKPSGNYLDIDFF*
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