Glyma19g00540 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma19g00540): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma19g00540): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma19g00540

Feature Type:	gene_model
Chromosome:	Gm19
Start:	318804
stop:	322983
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g00540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47750	AT	Annotation by Michelle Graham. TAIR10: D6 protein kinase like 2 \| chr5:19339947-19341864 REVERSE LENGTH=586	SoyBase	E_val: 0	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0610	KOG	Putative serine/threonine protein kinase	JGI		ISS
PTHR24351	Panther	RIBOSOMAL PROTEIN S6 KINASE	JGI		ISS
PTHR24351:SF88	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_I1N5J7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N5J7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P15792	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase PVPK-1 n=1 Tax=Phaseolus vulgaris RepID=KPK1_PHAVU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g00540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00540 not represented in the dataset	Glyma19g00540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g00540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g003800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g00540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g00540

Limit To All Plant Sequences

>Glyma19g00540.3   sequence type=transcript   gene model=Glyma19g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCGGATCTGAGGCAAAGAGGGTGTTCAGAATCAGTGTTCACTCTTTGTTCAGTGGTGTCTTGGTGCTCAAAGACTCCCAAAGTTACTTCCCTTTCTGTTTTCTTTCTTCTTCTCAACATGCTTGTTCCTCCACCACCACCACCCATGAACAAATGAAAACAACATTTCTTACTCTTCATCCACATTGCCATTTCTCTTATCTCATCAGACATTTTTGTAGGAGATTCTGTAATTAAAGAGCTCGTTGAATGAGTACATATTGGTAATTCACTGTGCTGAGTTGGATTTTTTAAGCCTGTTCAGATACCCTTCATGGAGTCACCTGTTAATGGAGTAGATTCCTTATCAGAGGTTCAGAATTCAGTTTCTGGGGTACATCATGATCTTCTTTCATCTGGGACTCCCCGTCCTTCACGGCCTCCCTTGAGAGCATCTAGAAACCATCAAACCAAGACCATCCACCATCAAAACAGCCATGTAATTAATCAAAAGCATTCCTATCAAGAGGGAAACAATGTGGAGCATGAAAGGTTGCCAACAAAATTGTGCAGCAAGCATCAACCACTTGATGATTCCAAGAATTGTGAGTCAAGTGATGTGTTAGAATCTGACAATTGCATCTTAGGGCCGTCAAAACGAGTTGTGGCTAATCATGCAAGGAGTTACTGCCAGTCAGAGGTTACTTTCTGTCCAAGTCCTCAGAGTAGTTTCTATTCAGCCACTGTCTATTCGGAAGCGAAACAAAGTTTCACCAACACTGAGGTCAGTGAGTGTGCTAGTGTTGACAAGTCTTGTGTAAGTGGAGAAATGGCAAATTCCTGTGATTTTAATGAGAGCAGGAAGACCAGCATCTGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGTCGTGTATAAACCACACAAGGCCAATGACATAAGATGGGAAGCGATTCAAGCTGTCCGAGCTCGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGCAATTGGGGTGTGGAGACATAGGGGTAGTGTATCTAGTTGAATTGAGTGGCACAAGAACTTCTTTTGCCATGAAGATCATGGACAAGACCAAGCTGGCGAATCGCAAGAAGGTTCTGAGGTCTCAGACCGAGAGAGAGATATTGCAGTCTTTAGATCACCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAGATATTTTCTTGCTTGGTAATGGAGTTCTGCCCCGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCAGGGAAGTATTTTTCGGAGCATGCCGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACCGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTAGTAAAGTCATCAATTAACAGCTTGGAGACAAAAAGCTCAGGATACTGCATTCAGCCTGCTTGCATTGAGCCAACTTGTGTAATGCAGCCAGACTGCATCCAACCAGCATGCTTCACGCCACGCTTTCTATCCGGAAAATCCAAGAAAGACAAAAAGTTCAAACCAAAGAATGACATGCATCACCAAGTGACCCCTCTTCCTGAGCTAATTGCTGAGCCAACAAATGCCAGATCAATGTCCTTTGTGGGGACACACGAGTACTTGGCGCCGGAGATCATCAAGGGTGAAGGGCACGGAAGTGCCGTGGACTGGTGGACATTTGGGATATTCTTGTATGAGCTTTTGTTTGGCAGAACACCATTCAAAGGTTCAGTGAATCGTGCAACACTGTTTAACGTAATTGGGCAGCCTCTACGGTTTCCAGAATCTCCTAGTGTCAGCTTTGCTGCCAGGGACTTGATCAGGGGCTTGCTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGTGGTGCGACAGAGATAAAACAGCATCCATTCTTTCAGAATGTTAACTGGGCACTGATCCGTTGTGCAAATCCTCCAGAGGTGCCAAGACAGGTTATGAAGCTTGCTCAAACGGAAAAGGAGCTTGGTGTGAAGCCTTCGGGTAATTATTTAGATATTGATTTCTTTTGATACTTATGTGCGACTATGTCCATTTTCTCCTTTGGACTAGTTTCCAGTTTCCATCTCTCATTTGTGGTGTTTCATGTTTGTGTGTCCAACATGGTTCTTTCCTTTGCCTAAAAAGGATGCTATGTTCTCAACTACATTGTTGATCAGCACTTATAATTGTCCATGCAAAACTGTTGTAAGAAATTTCACATGCTTTATATTGAGTAACAAAGTTTCTGTTCTCTTGTTTACTTCTACTCCTTTCAGAAAACTGCTTTGGATGAATGTTATGGTAAAACAAATA

Coding sequences of Glyma19g00540

Limit To All Plant Sequences

>Glyma19g00540.1   sequence type=CDS   gene model=Glyma19g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCACCTGTTAATGGAGTAGATTCCTTATCAGAGGTTCAGAATTCAGTTTCTGGGGTACATCATGATCTTCTTTCATCTGGGACTCCCCGTCCTTCACGGCCTCCCTTGAGAGCATCTAGAAACCATCAAACCAAGACCATCCACCATCAAAACAGCCATGTAATTAATCAAAAGCATTCCTATCAAGAGGGAAACAATGTGGAGCATGAAAGGTTGCCAACAAAATTGTGCAGCAAGCATCAACCACTTGATGATTCCAAGAATTGTGAGTCAAGTGATGTGTTAGAATCTGACAATTGCATCTTAGGGCCGTCAAAACGAGTTGTGGCTAATCATGCAAGGAGTTACTGCCAGTCAGAGGTTACTTTCTGTCCAAGTCCTCAGAGTAGTTTCTATTCAGCCACTGTCTATTCGGAAGCGAAACAAAGTTTCACCAACACTGAGGTCAGTGAGTGTGCTAGTGTTGACAAGTCTTGTGTAAGTGGAGAAATGGCAAATTCCTGTGATTTTAATGAGAGCAGGAAGACCAGCATCTGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGTCGTGTATAAACCACACAAGGCCAATGACATAAGATGGGAAGCGATTCAAGCTGTCCGAGCTCGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGCAATTGGGGTGTGGAGACATAGGGGTAGTGTATCTAGTTGAATTGAGTGGCACAAGAACTTCTTTTGCCATGAAGATCATGGACAAGACCAAGCTGGCGAATCGCAAGAAGGTTCTGAGGTCTCAGACCGAGAGAGAGATATTGCAGTCTTTAGATCACCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAGATATTTTCTTGCTTGGTAATGGAGTTCTGCCCCGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCAGGGAAGTATTTTTCGGAGCATGCCGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACCGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTAGTAAAGTCATCAATTAACAGCTTGGAGACAAAAAGCTCAGGATACTGCATTCAGCCTGCTTGCATTGAGCCAACTTGTGTAATGCAGCCAGACTGCATCCAACCAGCATGCTTCACGCCACGCTTTCTATCCGGAAAATCCAAGAAAGACAAAAAGTTCAAACCAAAGAATGACATGCATCACCAAGTGACCCCTCTTCCTGAGCTAATTGCTGAGCCAACAAATGCCAGATCAATGTCCTTTGTGGGGACACACGAGTACTTGGCGCCGGAGATCATCAAGGGTGAAGGGCACGGAAGTGCCGTGGACTGGTGGACATTTGGGATATTCTTGTATGAGCTTTTGTTTGGCAGAACACCATTCAAAGGTTCAGTGAATCGTGCAACACTGTTTAACGTAATTGGGCAGCCTCTACGGTTTCCAGAATCTCCTAGTGTCAGCTTTGCTGCCAGGGACTTGATCAGGGGCTTGCTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGTGGTGCGACAGAGATAAAACAGCATCCATTCTTTCAGAATGTTAACTGGGCACTGATCCGTTGTGCAAATCCTCCAGAGGTGCCAAGACAGGTTATGAAGCTTGCTCAAACGGAAAAGGAGCTTGGTGTGAAGCCTTCGGGTAATTATTTAGATATTGATTTCTTTTGA

>Glyma19g00540.3   sequence type=CDS   gene model=Glyma19g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCACCTGTTAATGGAGTAGATTCCTTATCAGAGGTTCAGAATTCAGTTTCTGGGGTACATCATGATCTTCTTTCATCTGGGACTCCCCGTCCTTCACGGCCTCCCTTGAGAGCATCTAGAAACCATCAAACCAAGACCATCCACCATCAAAACAGCCATGTAATTAATCAAAAGCATTCCTATCAAGAGGGAAACAATGTGGAGCATGAAAGGTTGCCAACAAAATTGTGCAGCAAGCATCAACCACTTGATGATTCCAAGAATTGTGAGTCAAGTGATGTGTTAGAATCTGACAATTGCATCTTAGGGCCGTCAAAACGAGTTGTGGCTAATCATGCAAGGAGTTACTGCCAGTCAGAGGTTACTTTCTGTCCAAGTCCTCAGAGTAGTTTCTATTCAGCCACTGTCTATTCGGAAGCGAAACAAAGTTTCACCAACACTGAGGTCAGTGAGTGTGCTAGTGTTGACAAGTCTTGTGTAAGTGGAGAAATGGCAAATTCCTGTGATTTTAATGAGAGCAGGAAGACCAGCATCTGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGTCGTGTATAAACCACACAAGGCCAATGACATAAGATGGGAAGCGATTCAAGCTGTCCGAGCTCGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGCAATTGGGGTGTGGAGACATAGGGGTAGTGTATCTAGTTGAATTGAGTGGCACAAGAACTTCTTTTGCCATGAAGATCATGGACAAGACCAAGCTGGCGAATCGCAAGAAGGTTCTGAGGTCTCAGACCGAGAGAGAGATATTGCAGTCTTTAGATCACCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAGATATTTTCTTGCTTGGTAATGGAGTTCTGCCCCGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCAGGGAAGTATTTTTCGGAGCATGCCGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACCGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTAGTAAAGTCATCAATTAACAGCTTGGAGACAAAAAGCTCAGGATACTGCATTCAGCCTGCTTGCATTGAGCCAACTTGTGTAATGCAGCCAGACTGCATCCAACCAGCATGCTTCACGCCACGCTTTCTATCCGGAAAATCCAAGAAAGACAAAAAGTTCAAACCAAAGAATGACATGCATCACCAAGTGACCCCTCTTCCTGAGCTAATTGCTGAGCCAACAAATGCCAGATCAATGTCCTTTGTGGGGACACACGAGTACTTGGCGCCGGAGATCATCAAGGGTGAAGGGCACGGAAGTGCCGTGGACTGGTGGACATTTGGGATATTCTTGTATGAGCTTTTGTTTGGCAGAACACCATTCAAAGGTTCAGTGAATCGTGCAACACTGTTTAACGTAATTGGGCAGCCTCTACGGTTTCCAGAATCTCCTAGTGTCAGCTTTGCTGCCAGGGACTTGATCAGGGGCTTGCTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGTGGTGCGACAGAGATAAAACAGCATCCATTCTTTCAGAATGTTAACTGGGCACTGATCCGTTGTGCAAATCCTCCAGAGGTGCCAAGACAGGTTATGAAGCTTGCTCAAACGGAAAAGGAGCTTGGTGTGAAGCCTTCGGGTAATTATTTAGATATTGATTTCTTTTGA

Predicted protein sequences of Glyma19g00540

Limit To All Plant Sequences

>Glyma19g00540.1   sequence type=predicted peptide   gene model=Glyma19g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESPVNGVDSLSEVQNSVSGVHHDLLSSGTPRPSRPPLRASRNHQTKTIHHQNSHVINQKHSYQEGNNVEHERLPTKLCSKHQPLDDSKNCESSDVLESDNCILGPSKRVVANHARSYCQSEVTFCPSPQSSFYSATVYSEAKQSFTNTEVSECASVDKSCVSGEMANSCDFNESRKTSICRASTGSDASDESSTSSLSSVVYKPHKANDIRWEAIQAVRARDGMLEMRHFRLLKQLGCGDIGVVYLVELSGTRTSFAMKIMDKTKLANRKKVLRSQTEREILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSINSLETKSSGYCIQPACIEPTCVMQPDCIQPACFTPRFLSGKSKKDKKFKPKNDMHHQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSVNRATLFNVIGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRQVMKLAQTEKELGVKPSGNYLDIDFF*

>Glyma19g00540.3   sequence type=predicted peptide   gene model=Glyma19g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESPVNGVDSLSEVQNSVSGVHHDLLSSGTPRPSRPPLRASRNHQTKTIHHQNSHVINQKHSYQEGNNVEHERLPTKLCSKHQPLDDSKNCESSDVLESDNCILGPSKRVVANHARSYCQSEVTFCPSPQSSFYSATVYSEAKQSFTNTEVSECASVDKSCVSGEMANSCDFNESRKTSICRASTGSDASDESSTSSLSSVVYKPHKANDIRWEAIQAVRARDGMLEMRHFRLLKQLGCGDIGVVYLVELSGTRTSFAMKIMDKTKLANRKKVLRSQTEREILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSINSLETKSSGYCIQPACIEPTCVMQPDCIQPACFTPRFLSGKSKKDKKFKPKNDMHHQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSVNRATLFNVIGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRQVMKLAQTEKELGVKPSGNYLDIDFF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain