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Report for Sequence Feature Glyma19g00540

Feature Type:gene_model
Chromosome:Gm19
Start:318804
stop:322983
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47750AT Annotation by Michelle Graham. TAIR10: D6 protein kinase like 2 | chr5:19339947-19341864 REVERSE LENGTH=586 SoyBaseE_val: 0ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0610 KOG Putative serine/threonine protein kinase JGI ISS
PTHR24351Panther RIBOSOMAL PROTEIN S6 KINASE JGI ISS
PTHR24351:SF88Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_I1N5J7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N5J7_SOYBN SoyBaseE_val: 0ISS
UniRef100_P15792UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase PVPK-1 n=1 Tax=Phaseolus vulgaris RepID=KPK1_PHAVU SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00540 not represented in the dataset

Glyma19g00540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g003800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g00540.3   sequence type=transcript   gene model=Glyma19g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCGGATCTGAGGCAAAGAGGGTGTTCAGAATCAGTGTTCACTCTTTGTTCAGTGGTGTCTTGGTGCTCAAAGACTCCCAAAGTTACTTCCCTTTCTGTTTTCTTTCTTCTTCTCAACATGCTTGTTCCTCCACCACCACCACCCATGAACAAATGAAAACAACATTTCTTACTCTTCATCCACATTGCCATTTCTCTTATCTCATCAGACATTTTTGTAGGAGATTCTGTAATTAAAGAGCTCGTTGAATGAGTACATATTGGTAATTCACTGTGCTGAGTTGGATTTTTTAAGCCTGTTCAGATACCCTTCATGGAGTCACCTGTTAATGGAGTAGATTCCTTATCAGAGGTTCAGAATTCAGTTTCTGGGGTACATCATGATCTTCTTTCATCTGGGACTCCCCGTCCTTCACGGCCTCCCTTGAGAGCATCTAGAAACCATCAAACCAAGACCATCCACCATCAAAACAGCCATGTAATTAATCAAAAGCATTCCTATCAAGAGGGAAACAATGTGGAGCATGAAAGGTTGCCAACAAAATTGTGCAGCAAGCATCAACCACTTGATGATTCCAAGAATTGTGAGTCAAGTGATGTGTTAGAATCTGACAATTGCATCTTAGGGCCGTCAAAACGAGTTGTGGCTAATCATGCAAGGAGTTACTGCCAGTCAGAGGTTACTTTCTGTCCAAGTCCTCAGAGTAGTTTCTATTCAGCCACTGTCTATTCGGAAGCGAAACAAAGTTTCACCAACACTGAGGTCAGTGAGTGTGCTAGTGTTGACAAGTCTTGTGTAAGTGGAGAAATGGCAAATTCCTGTGATTTTAATGAGAGCAGGAAGACCAGCATCTGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGTCGTGTATAAACCACACAAGGCCAATGACATAAGATGGGAAGCGATTCAAGCTGTCCGAGCTCGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGCAATTGGGGTGTGGAGACATAGGGGTAGTGTATCTAGTTGAATTGAGTGGCACAAGAACTTCTTTTGCCATGAAGATCATGGACAAGACCAAGCTGGCGAATCGCAAGAAGGTTCTGAGGTCTCAGACCGAGAGAGAGATATTGCAGTCTTTAGATCACCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAGATATTTTCTTGCTTGGTAATGGAGTTCTGCCCCGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCAGGGAAGTATTTTTCGGAGCATGCCGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACCGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTAGTAAAGTCATCAATTAACAGCTTGGAGACAAAAAGCTCAGGATACTGCATTCAGCCTGCTTGCATTGAGCCAACTTGTGTAATGCAGCCAGACTGCATCCAACCAGCATGCTTCACGCCACGCTTTCTATCCGGAAAATCCAAGAAAGACAAAAAGTTCAAACCAAAGAATGACATGCATCACCAAGTGACCCCTCTTCCTGAGCTAATTGCTGAGCCAACAAATGCCAGATCAATGTCCTTTGTGGGGACACACGAGTACTTGGCGCCGGAGATCATCAAGGGTGAAGGGCACGGAAGTGCCGTGGACTGGTGGACATTTGGGATATTCTTGTATGAGCTTTTGTTTGGCAGAACACCATTCAAAGGTTCAGTGAATCGTGCAACACTGTTTAACGTAATTGGGCAGCCTCTACGGTTTCCAGAATCTCCTAGTGTCAGCTTTGCTGCCAGGGACTTGATCAGGGGCTTGCTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGTGGTGCGACAGAGATAAAACAGCATCCATTCTTTCAGAATGTTAACTGGGCACTGATCCGTTGTGCAAATCCTCCAGAGGTGCCAAGACAGGTTATGAAGCTTGCTCAAACGGAAAAGGAGCTTGGTGTGAAGCCTTCGGGTAATTATTTAGATATTGATTTCTTTTGATACTTATGTGCGACTATGTCCATTTTCTCCTTTGGACTAGTTTCCAGTTTCCATCTCTCATTTGTGGTGTTTCATGTTTGTGTGTCCAACATGGTTCTTTCCTTTGCCTAAAAAGGATGCTATGTTCTCAACTACATTGTTGATCAGCACTTATAATTGTCCATGCAAAACTGTTGTAAGAAATTTCACATGCTTTATATTGAGTAACAAAGTTTCTGTTCTCTTGTTTACTTCTACTCCTTTCAGAAAACTGCTTTGGATGAATGTTATGGTAAAACAAATA

>Glyma19g00540.1   sequence type=CDS   gene model=Glyma19g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCACCTGTTAATGGAGTAGATTCCTTATCAGAGGTTCAGAATTCAGTTTCTGGGGTACATCATGATCTTCTTTCATCTGGGACTCCCCGTCCTTCACGGCCTCCCTTGAGAGCATCTAGAAACCATCAAACCAAGACCATCCACCATCAAAACAGCCATGTAATTAATCAAAAGCATTCCTATCAAGAGGGAAACAATGTGGAGCATGAAAGGTTGCCAACAAAATTGTGCAGCAAGCATCAACCACTTGATGATTCCAAGAATTGTGAGTCAAGTGATGTGTTAGAATCTGACAATTGCATCTTAGGGCCGTCAAAACGAGTTGTGGCTAATCATGCAAGGAGTTACTGCCAGTCAGAGGTTACTTTCTGTCCAAGTCCTCAGAGTAGTTTCTATTCAGCCACTGTCTATTCGGAAGCGAAACAAAGTTTCACCAACACTGAGGTCAGTGAGTGTGCTAGTGTTGACAAGTCTTGTGTAAGTGGAGAAATGGCAAATTCCTGTGATTTTAATGAGAGCAGGAAGACCAGCATCTGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGTCGTGTATAAACCACACAAGGCCAATGACATAAGATGGGAAGCGATTCAAGCTGTCCGAGCTCGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGCAATTGGGGTGTGGAGACATAGGGGTAGTGTATCTAGTTGAATTGAGTGGCACAAGAACTTCTTTTGCCATGAAGATCATGGACAAGACCAAGCTGGCGAATCGCAAGAAGGTTCTGAGGTCTCAGACCGAGAGAGAGATATTGCAGTCTTTAGATCACCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAGATATTTTCTTGCTTGGTAATGGAGTTCTGCCCCGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCAGGGAAGTATTTTTCGGAGCATGCCGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACCGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTAGTAAAGTCATCAATTAACAGCTTGGAGACAAAAAGCTCAGGATACTGCATTCAGCCTGCTTGCATTGAGCCAACTTGTGTAATGCAGCCAGACTGCATCCAACCAGCATGCTTCACGCCACGCTTTCTATCCGGAAAATCCAAGAAAGACAAAAAGTTCAAACCAAAGAATGACATGCATCACCAAGTGACCCCTCTTCCTGAGCTAATTGCTGAGCCAACAAATGCCAGATCAATGTCCTTTGTGGGGACACACGAGTACTTGGCGCCGGAGATCATCAAGGGTGAAGGGCACGGAAGTGCCGTGGACTGGTGGACATTTGGGATATTCTTGTATGAGCTTTTGTTTGGCAGAACACCATTCAAAGGTTCAGTGAATCGTGCAACACTGTTTAACGTAATTGGGCAGCCTCTACGGTTTCCAGAATCTCCTAGTGTCAGCTTTGCTGCCAGGGACTTGATCAGGGGCTTGCTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGTGGTGCGACAGAGATAAAACAGCATCCATTCTTTCAGAATGTTAACTGGGCACTGATCCGTTGTGCAAATCCTCCAGAGGTGCCAAGACAGGTTATGAAGCTTGCTCAAACGGAAAAGGAGCTTGGTGTGAAGCCTTCGGGTAATTATTTAGATATTGATTTCTTTTGA

>Glyma19g00540.3   sequence type=CDS   gene model=Glyma19g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCACCTGTTAATGGAGTAGATTCCTTATCAGAGGTTCAGAATTCAGTTTCTGGGGTACATCATGATCTTCTTTCATCTGGGACTCCCCGTCCTTCACGGCCTCCCTTGAGAGCATCTAGAAACCATCAAACCAAGACCATCCACCATCAAAACAGCCATGTAATTAATCAAAAGCATTCCTATCAAGAGGGAAACAATGTGGAGCATGAAAGGTTGCCAACAAAATTGTGCAGCAAGCATCAACCACTTGATGATTCCAAGAATTGTGAGTCAAGTGATGTGTTAGAATCTGACAATTGCATCTTAGGGCCGTCAAAACGAGTTGTGGCTAATCATGCAAGGAGTTACTGCCAGTCAGAGGTTACTTTCTGTCCAAGTCCTCAGAGTAGTTTCTATTCAGCCACTGTCTATTCGGAAGCGAAACAAAGTTTCACCAACACTGAGGTCAGTGAGTGTGCTAGTGTTGACAAGTCTTGTGTAAGTGGAGAAATGGCAAATTCCTGTGATTTTAATGAGAGCAGGAAGACCAGCATCTGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGTCGTGTATAAACCACACAAGGCCAATGACATAAGATGGGAAGCGATTCAAGCTGTCCGAGCTCGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGCAATTGGGGTGTGGAGACATAGGGGTAGTGTATCTAGTTGAATTGAGTGGCACAAGAACTTCTTTTGCCATGAAGATCATGGACAAGACCAAGCTGGCGAATCGCAAGAAGGTTCTGAGGTCTCAGACCGAGAGAGAGATATTGCAGTCTTTAGATCACCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAGATATTTTCTTGCTTGGTAATGGAGTTCTGCCCCGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCAGGGAAGTATTTTTCGGAGCATGCCGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACCGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTAGTAAAGTCATCAATTAACAGCTTGGAGACAAAAAGCTCAGGATACTGCATTCAGCCTGCTTGCATTGAGCCAACTTGTGTAATGCAGCCAGACTGCATCCAACCAGCATGCTTCACGCCACGCTTTCTATCCGGAAAATCCAAGAAAGACAAAAAGTTCAAACCAAAGAATGACATGCATCACCAAGTGACCCCTCTTCCTGAGCTAATTGCTGAGCCAACAAATGCCAGATCAATGTCCTTTGTGGGGACACACGAGTACTTGGCGCCGGAGATCATCAAGGGTGAAGGGCACGGAAGTGCCGTGGACTGGTGGACATTTGGGATATTCTTGTATGAGCTTTTGTTTGGCAGAACACCATTCAAAGGTTCAGTGAATCGTGCAACACTGTTTAACGTAATTGGGCAGCCTCTACGGTTTCCAGAATCTCCTAGTGTCAGCTTTGCTGCCAGGGACTTGATCAGGGGCTTGCTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGTGGTGCGACAGAGATAAAACAGCATCCATTCTTTCAGAATGTTAACTGGGCACTGATCCGTTGTGCAAATCCTCCAGAGGTGCCAAGACAGGTTATGAAGCTTGCTCAAACGGAAAAGGAGCTTGGTGTGAAGCCTTCGGGTAATTATTTAGATATTGATTTCTTTTGA

>Glyma19g00540.1   sequence type=predicted peptide   gene model=Glyma19g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESPVNGVDSLSEVQNSVSGVHHDLLSSGTPRPSRPPLRASRNHQTKTIHHQNSHVINQKHSYQEGNNVEHERLPTKLCSKHQPLDDSKNCESSDVLESDNCILGPSKRVVANHARSYCQSEVTFCPSPQSSFYSATVYSEAKQSFTNTEVSECASVDKSCVSGEMANSCDFNESRKTSICRASTGSDASDESSTSSLSSVVYKPHKANDIRWEAIQAVRARDGMLEMRHFRLLKQLGCGDIGVVYLVELSGTRTSFAMKIMDKTKLANRKKVLRSQTEREILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSINSLETKSSGYCIQPACIEPTCVMQPDCIQPACFTPRFLSGKSKKDKKFKPKNDMHHQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSVNRATLFNVIGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRQVMKLAQTEKELGVKPSGNYLDIDFF*

>Glyma19g00540.3   sequence type=predicted peptide   gene model=Glyma19g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESPVNGVDSLSEVQNSVSGVHHDLLSSGTPRPSRPPLRASRNHQTKTIHHQNSHVINQKHSYQEGNNVEHERLPTKLCSKHQPLDDSKNCESSDVLESDNCILGPSKRVVANHARSYCQSEVTFCPSPQSSFYSATVYSEAKQSFTNTEVSECASVDKSCVSGEMANSCDFNESRKTSICRASTGSDASDESSTSSLSSVVYKPHKANDIRWEAIQAVRARDGMLEMRHFRLLKQLGCGDIGVVYLVELSGTRTSFAMKIMDKTKLANRKKVLRSQTEREILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSINSLETKSSGYCIQPACIEPTCVMQPDCIQPACFTPRFLSGKSKKDKKFKPKNDMHHQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSVNRATLFNVIGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRQVMKLAQTEKELGVKPSGNYLDIDFF*







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