Glyma19g00530 - SoyBase

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Report for Sequence Feature Glyma19g00530

Feature Type:	gene_model
Chromosome:	Gm19
Start:	302219
stop:	306129
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g00530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40490	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr5:16225483-16227423 FORWARD LENGTH=423	SoyBase	E_val: 3.00E-98	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG4205	KOG	RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9S651	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S651_RICCO	SoyBase	E_val: 5.00E-103	ISS
UniRef100_I1N5J6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5J6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g00530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g00530

Paralog	Evidence	Comments
Glyma05g09040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g00530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g003900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g00530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g00530

Limit To All Plant Sequences

>Glyma19g00530.1   sequence type=CDS   gene model=Glyma19g00530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCACCCGGTAACGAGCATGTGGTGGGTGGCGCAGAACCCAACGACGTCGTTACGCCCTTTTCCCACAGAGAAGAACCTCACAATTCCCAACCCCTCACCGGCGACGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTATCAAGCACTTTGGTAAGTATGGTGAGATCACGGATTCAGTTATCATGAAGGACAGGAAAACTGGGCAGCCTCGTGGATTCGGGTTTATAACATATGCGGATCCCTCTGTGGTCGATAAAGTCATTGAGGAACCTCATGTCATCAATGGCAAACAAGTTGAGATTAAGCGGACGATACCGAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACACGCTACGGCGAAGTTAAAGATCACCAAATAATGCGGGACCACTCCACCAACCGATCTCGTGGCTTTGGGTTTATCACATTTGAATCTGAAGAAGCAGTTGATGATCTTCTGTCCATGGGGAACAAAATTGACTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACTCAGCACCTCCATCATCCAAGCGCTATAACGACTCTAGGTCTTCATACAGCAGTGGTGGATATGGAGATGCTTATGATGGATTTGGTGGCAGCTTTGGAATGGGGGGTGGTTATAGGTCAGGTGGTGCTTATGGTGGTGGTAGGGGTAGTGGTGCTTATGGTGGCTATGCAAGTGAATTTGGTGGGTATGGAGGATATGCTGGTGCGATGGGGCCGTATAGAGGAGATCCCTCCCTTGGGTATGCTGGTCGTTATGGAGGAAGCTTTAGCAGAGGGTATGATCTTGGTGGGTATGGCGGACCTAGTGAGAATTATGGAGCATATGGGGCAGGTGGGGGTTCTTCGGGTGGTGCTGGTGCTGGTGCCGGTGCCGGTGCCTACCAAAGTGGCTATGATGGAAACCTGGGAGGGGGATATGGAGGGGCTAGTGGAGGCCCCTTCTATGGGAGCACTAGAGGAGGATACAGCGCTGGTCGATATCATCCTTATGGAAGATAA

Predicted protein sequences of Glyma19g00530

Limit To All Plant Sequences

>Glyma19g00530.1   sequence type=predicted peptide   gene model=Glyma19g00530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESPGNEHVVGGAEPNDVVTPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEEPHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFESEEAVDDLLSMGNKIDFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYSSGGYGDAYDGFGGSFGMGGGYRSGGAYGGGRGSGAYGGYASEFGGYGGYAGAMGPYRGDPSLGYAGRYGGSFSRGYDLGGYGGPSENYGAYGAGGGSSGGAGAGAGAGAYQSGYDGNLGGGYGGASGGPFYGSTRGGYSAGRYHPYGR*

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