Report for Sequence Feature Glyma19g00490
Feature Type: gene_model
Chromosome: Gm19
Start: 271592
stop: 276543
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g00490
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G01560 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1421) | chr3:219884-221707 FORWARD LENGTH=511
SoyBase E_val: 9.00E-93 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF07223 PFAM
Protein of unknown function (DUF1421)
JGI ISS
UniRef100_B9SF87 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SF87_RICCO
SoyBase E_val: 2.00E-157 ISS
UniRef100_I1N5J4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5J4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g00490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma19g00490 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g004100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g00490
Coding sequences of Glyma19g00490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g00490.1 sequence type=CDS gene model=Glyma19g00490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATACGACGCCGTTTATGGACAAGCAGATTATGGATCTCACTCACGCTCACGGATCTTCTTCTTCTTCTTCCACTACGCAGTTGCAGAGCAAGGACTTCATTGACCTCATGAAAGAACCGCCACAAAACCAACATAACCATCACCATCATCATCTCGAAGATGAAGATGAAGAAGAAAAAGCGAGTCGTGGCAATGGGATCAGCAAAGACGACATCGTTCCCAGCTACGATTTCCAACCGATTCGCCCTCTCGCCGCTTCCAATTCCAATAATTTCGATTCCGCCGCATTCTCTCGCCCTTGGAACTCCGATTCCAACTCCAACGCTTCCCCTCCCATCCTCAAAAATTACAATTCTCTGGATTCAATGGAACCTGCGAAAGTCATTGTAGAAAAGGACCAAAGTGCTTTTGATGCTACAATGTTGTCTGAGATTGATCGTACCGTGAAGAAACATATGGAAAATATGCTTCATGTTCTGGAAGGTGTTAGTGCGCGGTTAACACAACTAGAAACCAGAACCCACCATCTTGAAAATTCCGTGGATGATTTGAAGGTATCGGTTGGAAATAGTCATGGTAGCACTGATGGAAAATTGAGGCAGATGGAGAATAGTCTTCGAGAGGTACAATCAGGGGTGCAGACTATCAAGGACAAGCAAGATATTGTGCAAGCTCAGCTGCAACTGGCAAAGCTAGAAGTGTCAAAGACGGATCCGCAATCAGAAACACAAACTAGCACAATTACTGATCCTGTTCAGCAAGCTGCATTTGCTCCTGGGCAAACTCAACCACAGCTTCCTACCCCTGCAAATCTTCCACAATCAATCCCTATTGTTCCTCCCCCTAATGCACCTCCTCAACCTTCCCCACAACAGGGTTTGCCACCTCCAGTTCATCTTCCAAACCAATTCCCTCAAAACCAAATCCCAGCTGCTCCTCAGAGAGATCAATACTTCCCACCACCGGTTCAGTCTCAGGAAACACCAAATCAGCAATACCAACTTCCGTTATCTCAGCAGCCACATGCTCAGCCCGGGGCACCACCGCATCAGCAATATCAACAGATCCCGCATCCCCAGTACCCTCAGCCAGCACCTCATCTACCTCAACAGCAGCCACCGTCGCATCCATCCATGAATCCGCCTCAACTACAATCTTCACTTGGTCACCATGTTGAGGAACCACCTTATCCTCCTCAGAATTATCCTCCCAATGTCCGCCAGCCACCATCTCAGTCACCCACCGGTCCTCCTCCTCCCCAACAGTTCTATGGGACACCACCTCATGCATATGAACCACCATCAAGCAGATCTGGTTCAGGCTATTCTTCTGGATATGGTACACTATCTGGCCCTGCCGAGCAATATCGTTATGGTGGACCACCTCAGTATGCTGGCACTCCTGCACTAAAACCACAACAACTGCCAACTGCTTCAGTGGCTCCGAGTGGTGGTAGCGGTTACCCTCAGCTCCCAACTGCCAGGGTACTCCCGCAAGCAATACCAACTGCATCTGCAGTGAGTGGTGGCTCAGGTTCTGCTGGAACTGGAGGCAGGGTTTCTGTCGATGATGTGGTCGACAAAGTTTCTACTATGGGATTCCCTAGAGACCATGTGAGGGCCACGGTTCGGAAGCTGACAGAGAATGGTCAGTCTGTTGACCTAAATGCAGTGCTGGATAAGCTCATGAATGATGGCGAAGTCCAACCCCCTCGAGGTTGGTTCGGTCGGTAG
Predicted protein sequences of Glyma19g00490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g00490.1 sequence type=predicted peptide gene model=Glyma19g00490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNTTPFMDKQIMDLTHAHGSSSSSSTTQLQSKDFIDLMKEPPQNQHNHHHHHLEDEDEEEKASRGNGISKDDIVPSYDFQPIRPLAASNSNNFDSAAFSRPWNSDSNSNASPPILKNYNSLDSMEPAKVIVEKDQSAFDATMLSEIDRTVKKHMENMLHVLEGVSARLTQLETRTHHLENSVDDLKVSVGNSHGSTDGKLRQMENSLREVQSGVQTIKDKQDIVQAQLQLAKLEVSKTDPQSETQTSTITDPVQQAAFAPGQTQPQLPTPANLPQSIPIVPPPNAPPQPSPQQGLPPPVHLPNQFPQNQIPAAPQRDQYFPPPVQSQETPNQQYQLPLSQQPHAQPGAPPHQQYQQIPHPQYPQPAPHLPQQQPPSHPSMNPPQLQSSLGHHVEEPPYPPQNYPPNVRQPPSQSPTGPPPPQQFYGTPPHAYEPPSSRSGSGYSSGYGTLSGPAEQYRYGGPPQYAGTPALKPQQLPTASVAPSGGSGYPQLPTARVLPQAIPTASAVSGGSGSAGTGGRVSVDDVVDKVSTMGFPRDHVRATVRKLTENGQSVDLNAVLDKLMNDGEVQPPRGWFGR*