Glyma19g00460 - SoyBase

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Report for Sequence Feature Glyma19g00460

Feature Type:	gene_model
Chromosome:	Gm19
Start:	247240
stop:	263170
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g00460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53720	AT	Annotation by Michelle Graham. TAIR10: cyclophilin 59 \| chr1:20057012-20059508 FORWARD LENGTH=506	SoyBase	E_val: 0	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003755	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0415	KOG	Predicted peptidyl prolyl cis-trans isomerase	JGI		ISS
PTHR11071	Panther	CYCLOPHILIN	JGI		ISS
PTHR11071:SF25	Panther	TRANSMEMBRANE PROTEIN TMP21-RELATED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
PF00098	PFAM	Zinc knuckle	JGI		ISS
PF00160	PFAM	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	JGI		ISS
UniRef100_G7KN14	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase-like protein n=1 Tax=Medicago truncatula RepID=G7KN14_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F192	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F192 related cluster n=1 Tax=unknown RepID=UPI000233F192	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g00460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00460 not represented in the dataset	Glyma19g00460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g00460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g004200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g00460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g00460

Limit To All Plant Sequences

>Glyma19g00460.2   sequence type=CDS   gene model=Glyma19g00460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGTGCTGATTGTGACGAGCTTAGGGGACCTTGTCGTCGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGGTGTCTATTTCACACTGTTCAAAAGGATTTTACTGCCCAAACTGGTGATCCAACTGGCACGGGAACTGGTGGTGATTCTGTTTACAAGTTTCTTTATGGTGATCAAGCTCGGTTTTTCAGTGATGAAATTCATATTGATTTGAAGCATTCCAAGACTGGAACAGTTGCCATGGCAAGTGCTGGAGAGAATCTGAATGCTTCACAGTTCTATATCACTCTGCGTGATGACCTTGATTACCTTGACGGAAAACACACGGTTTTTGGCGAGGTAGCTGAAGGATTTGAGACTTTAACGAGAATAAATGAGGCTTATGTGGATGAGAAGGGAAGACCCTATAAAAATATAAGAATCAAGCACACATACATCCTGGAGGATCCTTATGAAGATCCTTCTCAACTATCTGTGTTCATTCCTGATGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAAGTGCGACTTGAAGATGATTGGGTTCCCATGGATGAACAATTAAATCCGGCAGAACTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGACATTCCTGATGCTGAGATTAAGCCTCCAGACAATGTATTGTTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGATTTGCATACAATATTTTCACGCTTTGGAACTGTATCAATGGCTGAAATCATTCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACGGTCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACACGTGGATTTTAGTCAAAGTGTGTCAAAACTGTGGTCACAATACAGGCGGAAAGACCAAAAGGGTAAAGGTGGTGGTTGTTTCAAATGTGGTTCTACAGATCATATTGCTAAGGATTGCACTGGAGATTCTACAATGAAACAACCACAAGCAAAATACATCTTAAAGGATGATAATGCCCAACGTGGTGGAGATAATGCGAGATATGAAATGGTTTTTGATGGAGATAACTCACAAAGTCCAAGGCGAGATATAAAACACCAATGGCATGATGGTGACCTGGTTGAAAGAAAAGATCATAGAAGTCGTAGAGAACAGGATATGGTAGACTCAAACAACAGAGATAGGTATGGTGATAGAAGCAGAGGACATGGGGGAAATGGAGACAACAAAGCACGGTCTGAAAGAGGTGCAAGAGATTTGGGTTCCCATGCTGACACGAAAGACAGAGATAGACACATGGGAAGACATGGAGATGATGATTACAAGCGGAAAGATGAGTGTGACTCCAGAAAAAGAGATGAAGACGATGGCTACAAGAGGAAAGATGAGCAAGACTCAAGAAAAAGAGATGAAGACGATGGCTATAGAGAAAGACGAACTAGTCGAGATGATAGGAGAAACATGGATTCTAGCCATTTGGAGAGAAGGAATGACAGAGATTATAGGAAGAGACCTGAAGACAGTGGAAAGCAAGAAATGAAGATGGATTCTGGACGAAGAAAAGGAAGTCCAGTTGATGAAGATTACAAGAATGGAAGGGATGATGAAGATTACAAACATAGAAGGGAAGAACGTGGGCATAAAAGACAAGATACTAAAGCTGATGATGATTACAAGCGTAGAAGGGAGGATGTGGATTACAAACGCAGAAGGGAGGACGGAGATTACAGACATAGAAGGCAAGAACGTGGACATAAAAGACAAGATATTGTATCTGATGATTATCCTCATAGGAGGCATCATGGTGATAGGAGATGA

Predicted protein sequences of Glyma19g00460

Limit To All Plant Sequences

>Glyma19g00460.2   sequence type=predicted peptide   gene model=Glyma19g00460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKGRPYKNIRIKHTYILEDPYEDPSQLSVFIPDASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSMAEIIRDHKTGDSLCYAFIEFEDKRSCEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQYRRKDQKGKGGGCFKCGSTDHIAKDCTGDSTMKQPQAKYILKDDNAQRGGDNARYEMVFDGDNSQSPRRDIKHQWHDGDLVERKDHRSRREQDMVDSNNRDRYGDRSRGHGGNGDNKARSERGARDLGSHADTKDRDRHMGRHGDDDYKRKDECDSRKRDEDDGYKRKDEQDSRKRDEDDGYRERRTSRDDRRNMDSSHLERRNDRDYRKRPEDSGKQEMKMDSGRRKGSPVDEDYKNGRDDEDYKHRREERGHKRQDTKADDDYKRRREDVDYKRRREDGDYRHRRQERGHKRQDIVSDDYPHRRHHGDRR*

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