Report for Sequence Feature Glyma19g00460
Feature Type: gene_model
Chromosome: Gm19
Start: 247240
stop: 263170
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g00460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G53720 AT
Annotation by Michelle Graham. TAIR10: cyclophilin 59 | chr1:20057012-20059508 FORWARD LENGTH=506
SoyBase E_val: 0 ISS
GO:0000398 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome
SoyBase N/A ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
GO:0003755 GO-mf
Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG0415
KOG
Predicted peptidyl prolyl cis-trans isomerase
JGI ISS
PTHR11071 Panther
CYCLOPHILIN
JGI ISS
PTHR11071:SF25 Panther
TRANSMEMBRANE PROTEIN TMP21-RELATED
JGI ISS
PF00076 PFAM
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
JGI ISS
PF00098 PFAM
Zinc knuckle
JGI ISS
PF00160 PFAM
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
JGI ISS
UniRef100_G7KN14 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase-like protein n=1 Tax=Medicago truncatula RepID=G7KN14_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233F192 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F192 related cluster n=1 Tax=unknown RepID=UPI000233F192
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g00460
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma19g00460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g004200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g00460
Coding sequences of Glyma19g00460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g00460.2 sequence type=CDS gene model=Glyma19g00460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGGTGCTGATTGTGACGAGCTTAGGGGACCTTGTCGTCGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGGTGTCTATTTCACACTGTTCAAAAGGATTTTACTGCCCAAACTGGTGATCCAACTGGCACGGGAACTGGTGGTGATTCTGTTTACAAGTTTCTTTATGGTGATCAAGCTCGGTTTTTCAGTGATGAAATTCATATTGATTTGAAGCATTCCAAGACTGGAACAGTTGCCATGGCAAGTGCTGGAGAGAATCTGAATGCTTCACAGTTCTATATCACTCTGCGTGATGACCTTGATTACCTTGACGGAAAACACACGGTTTTTGGCGAGGTAGCTGAAGGATTTGAGACTTTAACGAGAATAAATGAGGCTTATGTGGATGAGAAGGGAAGACCCTATAAAAATATAAGAATCAAGCACACATACATCCTGGAGGATCCTTATGAAGATCCTTCTCAACTATCTGTGTTCATTCCTGATGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAAGTGCGACTTGAAGATGATTGGGTTCCCATGGATGAACAATTAAATCCGGCAGAACTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGACATTCCTGATGCTGAGATTAAGCCTCCAGACAATGTATTGTTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGATTTGCATACAATATTTTCACGCTTTGGAACTGTATCAATGGCTGAAATCATTCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACGGTCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACACGTGGATTTTAGTCAAAGTGTGTCAAAACTGTGGTCACAATACAGGCGGAAAGACCAAAAGGGTAAAGGTGGTGGTTGTTTCAAATGTGGTTCTACAGATCATATTGCTAAGGATTGCACTGGAGATTCTACAATGAAACAACCACAAGCAAAATACATCTTAAAGGATGATAATGCCCAACGTGGTGGAGATAATGCGAGATATGAAATGGTTTTTGATGGAGATAACTCACAAAGTCCAAGGCGAGATATAAAACACCAATGGCATGATGGTGACCTGGTTGAAAGAAAAGATCATAGAAGTCGTAGAGAACAGGATATGGTAGACTCAAACAACAGAGATAGGTATGGTGATAGAAGCAGAGGACATGGGGGAAATGGAGACAACAAAGCACGGTCTGAAAGAGGTGCAAGAGATTTGGGTTCCCATGCTGACACGAAAGACAGAGATAGACACATGGGAAGACATGGAGATGATGATTACAAGCGGAAAGATGAGTGTGACTCCAGAAAAAGAGATGAAGACGATGGCTACAAGAGGAAAGATGAGCAAGACTCAAGAAAAAGAGATGAAGACGATGGCTATAGAGAAAGACGAACTAGTCGAGATGATAGGAGAAACATGGATTCTAGCCATTTGGAGAGAAGGAATGACAGAGATTATAGGAAGAGACCTGAAGACAGTGGAAAGCAAGAAATGAAGATGGATTCTGGACGAAGAAAAGGAAGTCCAGTTGATGAAGATTACAAGAATGGAAGGGATGATGAAGATTACAAACATAGAAGGGAAGAACGTGGGCATAAAAGACAAGATACTAAAGCTGATGATGATTACAAGCGTAGAAGGGAGGATGTGGATTACAAACGCAGAAGGGAGGACGGAGATTACAGACATAGAAGGCAAGAACGTGGACATAAAAGACAAGATATTGTATCTGATGATTATCCTCATAGGAGGCATCATGGTGATAGGAGATGA
Predicted protein sequences of Glyma19g00460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g00460.2 sequence type=predicted peptide gene model=Glyma19g00460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKGRPYKNIRIKHTYILEDPYEDPSQLSVFIPDASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSMAEIIRDHKTGDSLCYAFIEFEDKRSCEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQYRRKDQKGKGGGCFKCGSTDHIAKDCTGDSTMKQPQAKYILKDDNAQRGGDNARYEMVFDGDNSQSPRRDIKHQWHDGDLVERKDHRSRREQDMVDSNNRDRYGDRSRGHGGNGDNKARSERGARDLGSHADTKDRDRHMGRHGDDDYKRKDECDSRKRDEDDGYKRKDEQDSRKRDEDDGYRERRTSRDDRRNMDSSHLERRNDRDYRKRPEDSGKQEMKMDSGRRKGSPVDEDYKNGRDDEDYKHRREERGHKRQDTKADDDYKRRREDVDYKRRREDGDYRHRRQERGHKRQDIVSDDYPHRRHHGDRR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
