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Report for Sequence Feature Glyma19g00400

Feature Type:gene_model
Chromosome:Gm19
Start:194920
stop:195970
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g00400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01570AT Annotation by Michelle Graham. TAIR10: Oleosin family protein | chr3:222152-222778 REVERSE LENGTH=183 SoyBaseE_val: 2.00E-41ISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0012511GO-cc Annotation by Michelle Graham. GO Cellular Compartment: monolayer-surrounded lipid storage body SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF01277PFAM Oleosin JGI ISS
UniRef100_I1N5I8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Oleosin n=1 Tax=Glycine max RepID=I1N5I8_SOYBN SoyBaseE_val: 5.00E-133ISS
UniRef100_I1N5I8UniRef Annotation by Michelle Graham. Best UniRef hit: Oleosin n=1 Tax=Glycine max RepID=I1N5I8_SOYBN SoyBaseE_val: 5.00E-133ISS

Expression Patterns of Glyma19g00400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00400 not represented in the dataset
Glyma19g00400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g00400
ParalogEvidenceComments
Glyma05g08880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g00400 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g004800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g00400
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g00400
>Glyma19g00400.1   sequence type=CDS   gene model=Glyma19g00400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAGTACGTTCACAACAACCCCAGCATGTTCAAGTCCACGCAAGCACAACACACACACCACAACAATACCGTTATTACCAAGGTGGCGCCAAAACACAACACCATGGCGGCGAAGGTGGCGGCGTTATGAGCCTCTTCCCGGAGATATCCCTCACGGGCTCCCAACTCCTCGCCCTCCTCGCCGGCGTCCCCCTCGGCGGCATGTTGCTACTCCTCTCCGGGGTCTCGCTCATCGCCAGCCTTGTGGGGCTGGCGGTGGCGACGCCGCTCTTCATTTTCTTCAGCCCGGTGCTGGTGCCCGCCGCCTTCGTCATAGGGATGGCGGTGACCGCGGTGCTGGCGGCGGGCGCGTGCGGGCTGGTGGGGCTGGTGTCGTTCTCGTGGCTGGTGAACTGTCTCCGGCAGATGCCACGGGGGACGACGACGAAGACGACGATGATGCGGCCGGAGCAGGCAAAGCGGCACGTGGCGGACATGGAAGAGTACGTGGGGAAGAAGACGAAGGATGTTGGGCAAGACATTCAGACAAGGGCACATGCACAGGGAACAACCGGGATGGTATAG
Predicted protein sequences of Glyma19g00400
>Glyma19g00400.1   sequence type=predicted peptide   gene model=Glyma19g00400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEVRSQQPQHVQVHASTTHTPQQYRYYQGGAKTQHHGGEGGGVMSLFPEISLTGSQLLALLAGVPLGGMLLLLSGVSLIASLVGLAVATPLFIFFSPVLVPAAFVIGMAVTAVLAAGACGLVGLVSFSWLVNCLRQMPRGTTTKTTMMRPEQAKRHVADMEEYVGKKTKDVGQDIQTRAHAQGTTGMV*






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