Glyma19g00370 - SoyBase

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Report for Sequence Feature Glyma19g00370

Feature Type:	gene_model
Chromosome:	Gm19
Start:	170194
stop:	173847
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g00370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55270	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr1:20618333-20619925 REVERSE LENGTH=434	SoyBase	E_val: 0	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24412	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24412:SF247	Panther		JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
UniRef100_G7JCV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7JCV8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E8CE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E8CE related cluster n=1 Tax=unknown RepID=UPI000233E8CE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g00370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g00370

Paralog	Evidence	Comments
Glyma05g08850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g00370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g005000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g00370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g00370

Limit To All Plant Sequences

>Glyma19g00370.1   sequence type=CDS   gene model=Glyma19g00370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGAGTTATTCAACCTCCTTTGGTTGATACGACTGCGTGTTTATGCAGAGTAGATACAGGCCTAAAAACTGTTGCAGGAGCAAAGAAATATGTCCCTGGAACAAAGCTCTGTCTTCGGCCTGACATTAAACCATCCATTCACCCAACTAGAAACAAGCCAGCACGTGGTGACAGAAGCCGTAGTCAATCCCCTCTACTTCCAGGACTCCCTGATGATCTGGCTATTGCTTGCCTAATCCGAGTCCCACGAGTTGAGCACCGTAAACTTCGGCTTGTCTGCAAAAGATGGTATCGTCTTTTGGTTGGTAACTTCTTTTACTTTCTCCGCAAGAGTCTTGGAATTGCAGAAGAGTGGATATATGTCATTAAGAGGGACCGAGACGGGAAAATATCATGGCATGCCTTTGATCCTGTGTACCAACTATGGCAGCCCCTGCCACCTGTTCCTAAGGAATATTCTGGAGCTCTTGGTTTTGGCTGTGCTGTTCTCAATGGCTGTCACCTTTACCTGTTTGGAGGGAAGGACCCACTAAAGGGATCCATGAGACGCGTCATATTTTATAGTGCTAGGACAAATAAATGGCACCGTGCCCCAGATATGCTTCGTAGGCGGCACTTCTTTGGCTCCTGTGTCATAAACAATTGTCTGTATGTGGCTGGTGGGGAGAATGAGGGTGTGCACCGGTCCTTGCGATCAGCTGAAGTGTATGATCCCAACAAGAATAGATGGTCATTTATTTCAGATATGAGCACTGCAATGGTGCCTTTCATAGGAGTTGTCTATGATGGTAAGTGGTTCATGAAGGGACTCGGTTCTCATCGGCAGGTTCTGAGTGAGGTCTATCAGCCAGAGAACGATAGCTGGTACACTATTTATGATGGAATGGTTTCTGGCTGGAGGAACCCTAGCTGTACCCTAAATGAAAAGCTCTATGCCTTAGACTGCAAGGACGGCTGCAAGATTCGGGTTTATGATGAGGTTGCTGATTCATGGAGCAAGCATATTGACAGTAAAATGCATTTGGGGAGCTCACGGGCTTTAGAGGCTGCTGCTCTTGTCCCCCTGAATGGGAAACTCTGTATCATCCGTAATAATATGAGCATTTCTCTGGTTGATGTTTCAAAACTTGAAGATTTGAAAGGATCATCCGCTGAACAGTTATGGGAAACCATTGCTGGGAAAGGACAGTTCAAGACCTTGGTCACAAATCTATGGTCTAGCCTTGCTGGGAGAAATCGACTCAAAAGCCACATAGTTCACTGTCAGGTTCTTCAAGCTTAG

Predicted protein sequences of Glyma19g00370

Limit To All Plant Sequences

>Glyma19g00370.1   sequence type=predicted peptide   gene model=Glyma19g00370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRVIQPPLVDTTACLCRVDTGLKTVAGAKKYVPGTKLCLRPDIKPSIHPTRNKPARGDRSRSQSPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLVGNFFYFLRKSLGIAEEWIYVIKRDRDGKISWHAFDPVYQLWQPLPPVPKEYSGALGFGCAVLNGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENEGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYDGKWFMKGLGSHRQVLSEVYQPENDSWYTIYDGMVSGWRNPSCTLNEKLYALDCKDGCKIRVYDEVADSWSKHIDSKMHLGSSRALEAAALVPLNGKLCIIRNNMSISLVDVSKLEDLKGSSAEQLWETIAGKGQFKTLVTNLWSSLAGRNRLKSHIVHCQVLQA*

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