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Report for Sequence Feature Glyma19g00360

Feature Type:gene_model
Chromosome:Gm19
Start:159623
stop:162757
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14590AT Annotation by Michelle Graham. TAIR10: Isocitrate/isopropylmalate dehydrogenase family protein | chr5:4703533-4706627 REVERSE LENGTH=485 SoyBaseE_val: 1.00E-54ISS
GO:0006102GO-bp Annotation by Michelle Graham. GO Biological Process: isocitrate metabolic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0000287GO-mf Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding SoyBaseN/AISS
GO:0004450GO-mf Annotation by Michelle Graham. GO Molecular Function: isocitrate dehydrogenase (NADP+) activity SoyBaseN/AISS
GO:0016616GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor SoyBaseN/AISS
GO:0051287GO-mf Annotation by Michelle Graham. GO Molecular Function: NAD binding SoyBaseN/AISS
PTHR11822Panther NADP-SPECIFIC ISOCITRATE DEHYDROGENASE JGI ISS
PF00180PFAM Isocitrate/isopropylmalate dehydrogenase JGI ISS
UniRef100_I1K1I6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Isocitrate dehydrogenase [NADP] n=2 Tax=Glycine max RepID=I1K1I6_SOYBN SoyBaseE_val: 4.00E-62ISS
UniRef100_I1N5I5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5I5_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00360 not represented in the dataset

Glyma19g00360 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g00360.1   sequence type=CDS   gene model=Glyma19g00360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCGGATTATATGGAGGATGATCAAGGATAAATATTTTGATTTGGGGCTTCAAAATCGTGATGCTACTGATGACAGGGTTACTGTGGAAAGTGCTGAAGCCACTCTTGAGTACAATGTTGCAGTGAAATGTGCAACAATAACACCTGTGCACAGCAAGGGGACAATTAGGAATATTTTAAATGGTACTGTTTTCCGTGAACCCATAATATGCCACAACATACAGAGAATTGTTTCCGGATGGAAAAAACCCATTTGTATTGGTAGGCATGCTTTTGGGGACCAGTATCGTGCCACTGATGCAATAATTACAGGATCTGGGAAGCTTAAGTTGGTATTTGTGCAATTTGCCAAGGAGATGGGATTGAATCCCTCCTTTATGGAGGCACCATTCTACTGGGGAAGGGGGACATCAGTTTCACTCTCCTTTTTTCCTGAACTCACCTGTGCACGTCCTTTTGCTCATGAGTTTCCTACTTTTTTTTTTTTGAACGGCCAAAAGTATCATATATTATATAAGGATAGTACCAGGGGTACTACAAAGATACATATAGAAAGCCATAGGCTGAGACCAGGTGAGAAAAATTACATCATCCACCAACTTAGAAATATCAAACTGTTGATTTTTAAAAATCATAGCGTTCCTGTAGTTCCAAATAGAAACTGTGGCTGCTACCCACCAAACCTTCCACTTTCTATTAATAGCTTGCAAAGCAGCCAAAGAGATGTGCTGAGTGAAGTGGTCCACAGGCCTACAATGCATGACTCTAGCTTCCTTGACCCAAGAGATAAATTCCCACCACAGTGGCATAATCTTTTTGCAAGAGAAGAAAAGATGAGAGGCAGATTCCACTTGGCTTTGGCAAAAGGTGCAGAGGTCACTATCAAGCGCGACTTGCCGTCTAGATAA

>Glyma19g00360.1   sequence type=predicted peptide   gene model=Glyma19g00360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRIIWRMIKDKYFDLGLQNRDATDDRVTVESAEATLEYNVAVKCATITPVHSKGTIRNILNGTVFREPIICHNIQRIVSGWKKPICIGRHAFGDQYRATDAIITGSGKLKLVFVQFAKEMGLNPSFMEAPFYWGRGTSVSLSFFPELTCARPFAHEFPTFFFLNGQKYHILYKDSTRGTTKIHIESHRLRPGEKNYIIHQLRNIKLLIFKNHSVPVVPNRNCGCYPPNLPLSINSLQSSQRDVLSEVVHRPTMHDSSFLDPRDKFPPQWHNLFAREEKMRGRFHLALAKGAEVTIKRDLPSR*







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