Glyma19g00360 - SoyBase

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Report for Sequence Feature Glyma19g00360

Feature Type:	gene_model
Chromosome:	Gm19
Start:	159623
stop:	162757
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g00360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14590	AT	Annotation by Michelle Graham. TAIR10: Isocitrate/isopropylmalate dehydrogenase family protein \| chr5:4703533-4706627 REVERSE LENGTH=485	SoyBase	E_val: 1.00E-54	ISS
GO:0006102	GO-bp	Annotation by Michelle Graham. GO Biological Process: isocitrate metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0004450	GO-mf	Annotation by Michelle Graham. GO Molecular Function: isocitrate dehydrogenase (NADP+) activity	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
PTHR11822	Panther	NADP-SPECIFIC ISOCITRATE DEHYDROGENASE	JGI		ISS
PF00180	PFAM	Isocitrate/isopropylmalate dehydrogenase	JGI		ISS
UniRef100_I1K1I6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isocitrate dehydrogenase [NADP] n=2 Tax=Glycine max RepID=I1K1I6_SOYBN	SoyBase	E_val: 4.00E-62	ISS
UniRef100_I1N5I5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5I5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g00360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g00360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g00360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g00360

Limit To All Plant Sequences

>Glyma19g00360.1   sequence type=CDS   gene model=Glyma19g00360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCGGATTATATGGAGGATGATCAAGGATAAATATTTTGATTTGGGGCTTCAAAATCGTGATGCTACTGATGACAGGGTTACTGTGGAAAGTGCTGAAGCCACTCTTGAGTACAATGTTGCAGTGAAATGTGCAACAATAACACCTGTGCACAGCAAGGGGACAATTAGGAATATTTTAAATGGTACTGTTTTCCGTGAACCCATAATATGCCACAACATACAGAGAATTGTTTCCGGATGGAAAAAACCCATTTGTATTGGTAGGCATGCTTTTGGGGACCAGTATCGTGCCACTGATGCAATAATTACAGGATCTGGGAAGCTTAAGTTGGTATTTGTGCAATTTGCCAAGGAGATGGGATTGAATCCCTCCTTTATGGAGGCACCATTCTACTGGGGAAGGGGGACATCAGTTTCACTCTCCTTTTTTCCTGAACTCACCTGTGCACGTCCTTTTGCTCATGAGTTTCCTACTTTTTTTTTTTTGAACGGCCAAAAGTATCATATATTATATAAGGATAGTACCAGGGGTACTACAAAGATACATATAGAAAGCCATAGGCTGAGACCAGGTGAGAAAAATTACATCATCCACCAACTTAGAAATATCAAACTGTTGATTTTTAAAAATCATAGCGTTCCTGTAGTTCCAAATAGAAACTGTGGCTGCTACCCACCAAACCTTCCACTTTCTATTAATAGCTTGCAAAGCAGCCAAAGAGATGTGCTGAGTGAAGTGGTCCACAGGCCTACAATGCATGACTCTAGCTTCCTTGACCCAAGAGATAAATTCCCACCACAGTGGCATAATCTTTTTGCAAGAGAAGAAAAGATGAGAGGCAGATTCCACTTGGCTTTGGCAAAAGGTGCAGAGGTCACTATCAAGCGCGACTTGCCGTCTAGATAA

Predicted protein sequences of Glyma19g00360

Limit To All Plant Sequences

>Glyma19g00360.1   sequence type=predicted peptide   gene model=Glyma19g00360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRIIWRMIKDKYFDLGLQNRDATDDRVTVESAEATLEYNVAVKCATITPVHSKGTIRNILNGTVFREPIICHNIQRIVSGWKKPICIGRHAFGDQYRATDAIITGSGKLKLVFVQFAKEMGLNPSFMEAPFYWGRGTSVSLSFFPELTCARPFAHEFPTFFFLNGQKYHILYKDSTRGTTKIHIESHRLRPGEKNYIIHQLRNIKLLIFKNHSVPVVPNRNCGCYPPNLPLSINSLQSSQRDVLSEVVHRPTMHDSSFLDPRDKFPPQWHNLFAREEKMRGRFHLALAKGAEVTIKRDLPSR*

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