|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G14590 | AT | Annotation by Michelle Graham. TAIR10: Isocitrate/isopropylmalate dehydrogenase family protein | chr5:4703533-4706627 REVERSE LENGTH=485 | SoyBase | E_val: 1.00E-54 | ISS |
GO:0006102 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isocitrate metabolic process | SoyBase | N/A | ISS |
GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
GO:0004450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: isocitrate dehydrogenase (NADP+) activity | SoyBase | N/A | ISS |
GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
PTHR11822 | Panther | NADP-SPECIFIC ISOCITRATE DEHYDROGENASE | JGI | ISS | |
PF00180 | PFAM | Isocitrate/isopropylmalate dehydrogenase | JGI | ISS | |
UniRef100_I1K1I6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isocitrate dehydrogenase [NADP] n=2 Tax=Glycine max RepID=I1K1I6_SOYBN | SoyBase | E_val: 4.00E-62 | ISS |
UniRef100_I1N5I5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5I5_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma19g00360 not represented in the dataset |
Glyma19g00360 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g00360.1 sequence type=CDS gene model=Glyma19g00360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGCGGATTATATGGAGGATGATCAAGGATAAATATTTTGATTTGGGGCTTCAAAATCGTGATGCTACTGATGACAGGGTTACTGTGGAAAGTGCTGAAGCCACTCTTGAGTACAATGTTGCAGTGAAATGTGCAACAATAACACCTGTGCACAGCAAGGGGACAATTAGGAATATTTTAAATGGTACTGTTTTCCGTGAACCCATAATATGCCACAACATACAGAGAATTGTTTCCGGATGGAAAAAACCCATTTGTATTGGTAGGCATGCTTTTGGGGACCAGTATCGTGCCACTGATGCAATAATTACAGGATCTGGGAAGCTTAAGTTGGTATTTGTGCAATTTGCCAAGGAGATGGGATTGAATCCCTCCTTTATGGAGGCACCATTCTACTGGGGAAGGGGGACATCAGTTTCACTCTCCTTTTTTCCTGAACTCACCTGTGCACGTCCTTTTGCTCATGAGTTTCCTACTTTTTTTTTTTTGAACGGCCAAAAGTATCATATATTATATAAGGATAGTACCAGGGGTACTACAAAGATACATATAGAAAGCCATAGGCTGAGACCAGGTGAGAAAAATTACATCATCCACCAACTTAGAAATATCAAACTGTTGATTTTTAAAAATCATAGCGTTCCTGTAGTTCCAAATAGAAACTGTGGCTGCTACCCACCAAACCTTCCACTTTCTATTAATAGCTTGCAAAGCAGCCAAAGAGATGTGCTGAGTGAAGTGGTCCACAGGCCTACAATGCATGACTCTAGCTTCCTTGACCCAAGAGATAAATTCCCACCACAGTGGCATAATCTTTTTGCAAGAGAAGAAAAGATGAGAGGCAGATTCCACTTGGCTTTGGCAAAAGGTGCAGAGGTCACTATCAAGCGCGACTTGCCGTCTAGATAA
>Glyma19g00360.1 sequence type=predicted peptide gene model=Glyma19g00360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTRIIWRMIKDKYFDLGLQNRDATDDRVTVESAEATLEYNVAVKCATITPVHSKGTIRNILNGTVFREPIICHNIQRIVSGWKKPICIGRHAFGDQYRATDAIITGSGKLKLVFVQFAKEMGLNPSFMEAPFYWGRGTSVSLSFFPELTCARPFAHEFPTFFFLNGQKYHILYKDSTRGTTKIHIESHRLRPGEKNYIIHQLRNIKLLIFKNHSVPVVPNRNCGCYPPNLPLSINSLQSSQRDVLSEVVHRPTMHDSSFLDPRDKFPPQWHNLFAREEKMRGRFHLALAKGAEVTIKRDLPSR*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||