SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G27640 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr3:10232307-10235467 FORWARD LENGTH=535 | SoyBase | E_val: 1.00E-175 | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG0265 | KOG | U5 snRNP-specific protein-like factor and related proteins | JGI | ISS | |
| PTHR22852 | Panther | LETHAL(2)DENTICLELESS PROTEIN (RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN) | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_G7KQ08 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Coatomer protein complex subunit alpha n=1 Tax=Medicago truncatula RepID=G7KQ08_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N5I4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5I4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g00350 not represented in the dataset |
Glyma19g00350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g08840 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g005200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g00350.2 sequence type=transcript gene model=Glyma19g00350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATCAAGTATAATATATTTTCTTTGATTGAAATCAAAATCCCTAACCTAACCCCTTTTCTTCGTCTTGGTTCTTTGAATGGACACTCCAAGCTCCCACTCTCTCTTCACCCACATCGCCTCCAGAGAACTCTTCCGAGTTCCAAAACGACCTCGTATGGACGGATTTGTCTCCGGCTTCAACGAAACTGGCCTCCTCGCCGTACAGCACAATGCCCAACACACCATTCCCCTCTCTCTCTCCTTCTGCAAGACTTCTAAATTTGGACACATTCTCGCTGTGTCCGATGAGGAGGGTTACGTCACCTTGTTTGATACTCGCCGCAAATTCCCTGTTACTTCAAACTTTGAAGAAAACTCAGAGAAAGTGAAGATTTGTGATTGGGTTTCTCACCATAATGCTGTTTTTGATACCTGTTGGAATAAGGAAGATACCCAGATTCTCACTGCTTCTGGTGATCAAACAATAAAAGTATGGGATGTTCAAGAACAGAAGTGTCTTGGACTGTTGACTGGGCACACAGGAAGTGTGAAATCTATGTGTTCTCATCCAACTAATTCTGATATTATTGTCTCTGGTTCTAGAGATGGATCCTTTCGTATTTGGGACTTGAGATGCAAGTCCACTGCTAAGAGTAGGTGTGGAGAAGTTAGCATATGTTCAATGGGAGGCGTCAAAGGAGCACATATTTCATCTCAAGCAAGACGAACTAGGAGAGGAAGGGCTGCTTCAATGAGCATTACATCTGTTCTTTGTCTCAAGGACCAGGTTTCTATAGCCACTGCTGGGGCGGTGGATAGTGTGTTGAAGTTTTGGGACACCAGAAATTTGAAAAGTACTGTCACTCAGACTTCTCCTAGTCCTCAGTCAACTGAAAAGCAAACATTACATGGAATATCAAGCTTGTCCCAAGATGAAAGTGGACTTTTTCTTTCAGCCTCTTGCATGGATAATCGAATTTATTTGTATAACACTCTTCAACTTGAAAAAGGGCCTTTAAAATCTTTTTCTGGGTGCCGAATTGAATCATTTTTTGTAAAGTCTGCAATTAGCCCTGATGCATCGAACATAGTCAGTGGTTCTAGTGATGGAAATGCCTATGTTTGGAAGGTTGACAAACCTCTGGAAGATCCTACTATTTTGAAAAGTCATGATGGCGAAGTTACAGCAGTTGACTGGTGTAGCTCTGAAATTGGGAAATTAGCAACTTGTTCTGATGATTTCACAGTTCGTACATGGAATAAAAACAGTTATGTCTCCAGTACACAATGTGCATCTGCCATCCGAAGAAGAGTAATGGCAATTCCTAGTATAGAGTGCAAAATGCTTTTAAACAATGGAAAAAGGTACTCTAAGACAAATGAAGATGCTTTCTTACCATACGATGCACTACACCCAATTACGTCGCCCACTCCAATCACACCACCTAAAATGAATATATCTGAAGGCAACCAACTTTCTTCAGGATTAGATCTAAATGCATCCTCTGAAAAAACTCCAGAATCTGCTTTGAAGAGCCCCTCATCTGTATTGAACCCTCCATCCTCCCTAAAAAGAACTATCCGAGACTACTTTTTAGCATCTTCAAGAACCTTGTAGGCTTCTTATTAAACCAACGAAATTCTGTAGTTAAGTAAATTTTTTGCACATAGTGCTTGCATGGGTGGCTTGGAACTTCTCCAGCCATGTTCTTGGGTTTGAAATGTAAAGCACATTAAAGGATTCGTTATAGCAACAATATTTGTTTTTTATACCCAAATTCAGATCAAGCTGGGGAGGGCAAAAGGTTGAAAACATAAAAAAAAGCTGGACAGATTTTTGCTTCTGCTGATTCCTAGAGACAAAGAGTGTGTGCTAACATTTTCTTGATGTGCATATGAATTCTGACTGTCAGGTTTTGTGCAATACTATTGAGCCAAAAAGTCTTGACTCAAATACCCTATTTAATGTGAATTAGTCAACTGTTTGAATGTAAGGCATGGCTAGACATAAGGTGCTTAACATTGGCCCTGAGCTAATGGCTATCTTTTTGCCAGAAGTTTTTATTCATGCTTTATAAGTGCAATGTACATACAGAGATGAAAGCGCTATGATTTTTTCACACAAAAAAGCACTGATTTTATTATTTATTTTTTAAAAGTAAACCAAATTAGA
>Glyma19g00350.1 sequence type=CDS gene model=Glyma19g00350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACACTCCAAGCTCCCACTCTCTCTTCACCCACATCGCCTCCAGAGAACTCTTCCGAGTTCCAAAACGACCTCGTATGGACGGATTTGTCTCCGGCTTCAACGAAACTGGCCTCCTCGCCGTACAGCACAATGCCCAACACACCATTCCCCTCTCTCTCTCCTTCTGCAAGACTTCTAAATTTGGACACATTCTCGCTGTGTCCGATGAGGAGGGTTACGTCACCTTGTTTGATACTCGCCGCAAATTCCCTGTTACTTCAAACTTTGAAGAAAACTCAGAGAAAGTGAAGATTTGTGATTGGGTTTCTCACCATAATGCTGTTTTTGATACCTGTTGGAATAAGGAAGATACCCAGATTCTCACTGCTTCTGGTGATCAAACAATAAAAGTATGGGATGTTCAAGAACAGAAGTGTCTTGGACTGTTGACTGGGCACACAGGAAGTGTGAAATCTATGTGTTCTCATCCAACTAATTCTGATATTATTGTCTCTGGTTCTAGAGATGGATCCTTTCGTATTTGGGACTTGAGATGCAAGTCCACTGCTAAGAGTAGGTGTGGAGAAGTTAGCATATGTTCAATGGGAGGCGTCAAAGGAGCACATATTTCATCTCAAGCAAGACGAACTAGGAGAGGAAGGGCTGCTTCAATGAGCATTACATCTGTTCTTTGTCTCAAGGACCAGGTTTCTATAGCCACTGCTGGGGCGGTGGATAGTGTGTTGAAGTTTTGGGACACCAGAAATTTGAAAAGTACTGTCACTCAGACTTCTCCTAGTCCTCAGTCAACTGAAAAGCAAACATTACATGGAATATCAAGCTTGTCCCAAGATGAAAGTGGACTTTTTCTTTCAGCCTCTTGCATGGATAATCGAATTTATTTGTATAACACTCTTCAACTTGAAAAAGGGCCTTTAAAATCTTTTTCTGGGTGCCGAATTGAATCATTTTTTGTAAAGTCTGCAATTAGCCCTGATGCATCGAACATAGTCAGTGGTTCTAGTGATGGAAATGCCTATGTTTGGAAGGTTGACAAACCTCTGGAAGATCCTACTATTTTGAAAAGTCATGATGGCGAAGTTACAGCAGTTGACTGGTGTAGCTCTGAAATTGGGAAATTAGCAACTTGTTCTGATGATTTCACAGTTCGTACATGGAATAAAAACAGTTATGTCTCCAGTACACAATGTGCATCTGCCATCCGAAGAAGAGTAATGGCAATTCCTAGTATAGAGTGCAAAATGCTTTTAAACAATGGAAAAAGGTACTCTAAGACAAATGAAGATGCTTTCTTACCATACGATGCACTACACCCAATTACGTCGCCCACTCCAATCACACCACCTAAAATGAATATATCTGAAGGCAACCAACTTTCTTCAGGATTAGATCTAAATGCATCCTCTGAAAAAACTCCAGAATCTGCTTTGAAGAGCCCCTCATCTGTATTGAACCCTCCATCCTCCCTAAAAAGAACTATCCGAGACTACTTTTTAGCATCTTCAAGAACCTTGTAG >Glyma19g00350.2 sequence type=CDS gene model=Glyma19g00350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACACTCCAAGCTCCCACTCTCTCTTCACCCACATCGCCTCCAGAGAACTCTTCCGAGTTCCAAAACGACCTCGTATGGACGGATTTGTCTCCGGCTTCAACGAAACTGGCCTCCTCGCCGTACAGCACAATGCCCAACACACCATTCCCCTCTCTCTCTCCTTCTGCAAGACTTCTAAATTTGGACACATTCTCGCTGTGTCCGATGAGGAGGGTTACGTCACCTTGTTTGATACTCGCCGCAAATTCCCTGTTACTTCAAACTTTGAAGAAAACTCAGAGAAAGTGAAGATTTGTGATTGGGTTTCTCACCATAATGCTGTTTTTGATACCTGTTGGAATAAGGAAGATACCCAGATTCTCACTGCTTCTGGTGATCAAACAATAAAAGTATGGGATGTTCAAGAACAGAAGTGTCTTGGACTGTTGACTGGGCACACAGGAAGTGTGAAATCTATGTGTTCTCATCCAACTAATTCTGATATTATTGTCTCTGGTTCTAGAGATGGATCCTTTCGTATTTGGGACTTGAGATGCAAGTCCACTGCTAAGAGTAGGTGTGGAGAAGTTAGCATATGTTCAATGGGAGGCGTCAAAGGAGCACATATTTCATCTCAAGCAAGACGAACTAGGAGAGGAAGGGCTGCTTCAATGAGCATTACATCTGTTCTTTGTCTCAAGGACCAGGTTTCTATAGCCACTGCTGGGGCGGTGGATAGTGTGTTGAAGTTTTGGGACACCAGAAATTTGAAAAGTACTGTCACTCAGACTTCTCCTAGTCCTCAGTCAACTGAAAAGCAAACATTACATGGAATATCAAGCTTGTCCCAAGATGAAAGTGGACTTTTTCTTTCAGCCTCTTGCATGGATAATCGAATTTATTTGTATAACACTCTTCAACTTGAAAAAGGGCCTTTAAAATCTTTTTCTGGGTGCCGAATTGAATCATTTTTTGTAAAGTCTGCAATTAGCCCTGATGCATCGAACATAGTCAGTGGTTCTAGTGATGGAAATGCCTATGTTTGGAAGGTTGACAAACCTCTGGAAGATCCTACTATTTTGAAAAGTCATGATGGCGAAGTTACAGCAGTTGACTGGTGTAGCTCTGAAATTGGGAAATTAGCAACTTGTTCTGATGATTTCACAGTTCGTACATGGAATAAAAACAGTTATGTCTCCAGTACACAATGTGCATCTGCCATCCGAAGAAGAGTAATGGCAATTCCTAGTATAGAGTGCAAAATGCTTTTAAACAATGGAAAAAGGTACTCTAAGACAAATGAAGATGCTTTCTTACCATACGATGCACTACACCCAATTACGTCGCCCACTCCAATCACACCACCTAAAATGAATATATCTGAAGGCAACCAACTTTCTTCAGGATTAGATCTAAATGCATCCTCTGAAAAAACTCCAGAATCTGCTTTGAAGAGCCCCTCATCTGTATTGAACCCTCCATCCTCCCTAAAAAGAACTATCCGAGACTACTTTTTAGCATCTTCAAGAACCTTGTAG
>Glyma19g00350.1 sequence type=predicted peptide gene model=Glyma19g00350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDTPSSHSLFTHIASRELFRVPKRPRMDGFVSGFNETGLLAVQHNAQHTIPLSLSFCKTSKFGHILAVSDEEGYVTLFDTRRKFPVTSNFEENSEKVKICDWVSHHNAVFDTCWNKEDTQILTASGDQTIKVWDVQEQKCLGLLTGHTGSVKSMCSHPTNSDIIVSGSRDGSFRIWDLRCKSTAKSRCGEVSICSMGGVKGAHISSQARRTRRGRAASMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSTVTQTSPSPQSTEKQTLHGISSLSQDESGLFLSASCMDNRIYLYNTLQLEKGPLKSFSGCRIESFFVKSAISPDASNIVSGSSDGNAYVWKVDKPLEDPTILKSHDGEVTAVDWCSSEIGKLATCSDDFTVRTWNKNSYVSSTQCASAIRRRVMAIPSIECKMLLNNGKRYSKTNEDAFLPYDALHPITSPTPITPPKMNISEGNQLSSGLDLNASSEKTPESALKSPSSVLNPPSSLKRTIRDYFLASSRTL* >Glyma19g00350.2 sequence type=predicted peptide gene model=Glyma19g00350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDTPSSHSLFTHIASRELFRVPKRPRMDGFVSGFNETGLLAVQHNAQHTIPLSLSFCKTSKFGHILAVSDEEGYVTLFDTRRKFPVTSNFEENSEKVKICDWVSHHNAVFDTCWNKEDTQILTASGDQTIKVWDVQEQKCLGLLTGHTGSVKSMCSHPTNSDIIVSGSRDGSFRIWDLRCKSTAKSRCGEVSICSMGGVKGAHISSQARRTRRGRAASMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSTVTQTSPSPQSTEKQTLHGISSLSQDESGLFLSASCMDNRIYLYNTLQLEKGPLKSFSGCRIESFFVKSAISPDASNIVSGSSDGNAYVWKVDKPLEDPTILKSHDGEVTAVDWCSSEIGKLATCSDDFTVRTWNKNSYVSSTQCASAIRRRVMAIPSIECKMLLNNGKRYSKTNEDAFLPYDALHPITSPTPITPPKMNISEGNQLSSGLDLNASSEKTPESALKSPSSVLNPPSSLKRTIRDYFLASSRTL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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