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Report for Sequence Feature Glyma19g00320

Feature Type:gene_model
Chromosome:Gm19
Start:122257
stop:123353
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g00320
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G50170AT Annotation by Michelle Graham. TAIR10: sirohydrochlorin ferrochelatase B | chr1:18582087-18583514 FORWARD LENGTH=225 SoyBaseE_val: 2.00E-29ISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009236GO-bp Annotation by Michelle Graham. GO Biological Process: cobalamin biosynthetic process SoyBaseN/AISS
GO:0019354GO-bp Annotation by Michelle Graham. GO Biological Process: siroheme biosynthetic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016829GO-mf Annotation by Michelle Graham. GO Molecular Function: lyase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
GO:0051266GO-mf Annotation by Michelle Graham. GO Molecular Function: sirohydrochlorin ferrochelatase activity SoyBaseN/AISS
PF01903PFAM CbiX JGI ISS
UniRef100_G7KHH6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Sirohydrochlorin ferrochelatase n=1 Tax=Medicago truncatula RepID=G7KHH6_MEDTR SoyBaseE_val: 2.00E-42ISS
UniRef100_I1N5I1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5I1_SOYBN SoyBaseE_val: 6.00E-92ISS

Expression Patterns of Glyma19g00320
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00320 not represented in the dataset
Glyma19g00320 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g00320
ParalogEvidenceComments
Glyma05g08810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g00320 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g005500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g00320
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g00320
>Glyma19g00320.2   sequence type=CDS   gene model=Glyma19g00320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGTGAAGTCTCTATCACCTTATTCTCATGCCTTCTCAAGTTTTTCTGCAAGTTTTGGAACAAACCCAAGTTGGGTTCCCTTAAAGTCCTCAAATAGCCTCTGCTGTTCCTCCAAGCCTAGAAATTTAAGCAGATTTTTATGTCTGAGCACTCAAAATGGTGGTGGCTTCAGAGAAAACTCTGGTGAAGTTGGACGTGGAGATGCAGTGATAATTGTGGATCATGGGTCACGTCGCAAAGAGTCAAATCTCATGCTTAGTAAGCTAAACCCATCCGTTTTGTGTTTTATCACTGTTTTTGTATTAACTCCTTTTATTTTTTTATTTTTTGGACGGGGGGTGGGGGTGTGTGTGGAGCCTGCTCATATGGAATTAGCAGAACCATCAATAAGAGATGCTTTTCAATCTTGCGTTGAACAAGGTGCTCATCGCATTATTGTTAGTCCCTTTTTTCTCTTTCCTGGGAGGCATTGGAGTCAGGTAGGTCTGCATAAAATTCTCTCCTAG
Predicted protein sequences of Glyma19g00320
>Glyma19g00320.2   sequence type=predicted peptide   gene model=Glyma19g00320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVKSLSPYSHAFSSFSASFGTNPSWVPLKSSNSLCCSSKPRNLSRFLCLSTQNGGGFRENSGEVGRGDAVIIVDHGSRRKESNLMLSKLNPSVLCFITVFVLTPFIFLFFGRGVGVCVEPAHMELAEPSIRDAFQSCVEQGAHRIIVSPFFLFPGRHWSQVGLHKILS*






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