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Report for Sequence Feature Glyma19g00270

Feature Type:gene_model
Chromosome:Gm19
Start:86882
stop:92780
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01550AT Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate (pep)/phosphate translocator 2 | chr3:216947-218856 REVERSE LENGTH=383 SoyBaseE_val: 5.00E-150ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006863GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport SoyBaseN/AISS
GO:0009718GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process SoyBaseN/AISS
GO:0015713GO-bp Annotation by Michelle Graham. GO Biological Process: phosphoglycerate transport SoyBaseN/AISS
GO:0015714GO-bp Annotation by Michelle Graham. GO Biological Process: phosphoenolpyruvate transport SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0015120GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoglycerate transmembrane transporter activity SoyBaseN/AISS
GO:0015121GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate:phosphate antiporter activity SoyBaseN/AISS
GO:0015297GO-mf Annotation by Michelle Graham. GO Molecular Function: antiporter activity SoyBaseN/AISS
KOG1441 KOG Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter JGI ISS
PTHR11132Panther SOLUTE CARRIER FAMILY 35 JGI ISS
PF00892PFAM EamA-like transporter family JGI ISS
PF03151PFAM Triose-phosphate Transporter family JGI ISS
UniRef100_G7KHI6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphate/phosphoenolpyruvate translocator n=1 Tax=Medicago truncatula RepID=G7KHI6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N5H8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5H8_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g00270 not represented in the dataset

Glyma19g00270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g005900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g00270.1   sequence type=CDS   gene model=Glyma19g00270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCTTATTCTCTCTCTTTGTTAGCCTCTGTCTCCCCCAAAATGCACACCCTTCTTTCTTTCTCCTCATCACACTCTCCACATCTTCCAAACCACAACATAACCAAATCCAATAATAAACTCTCTCATTCCATCAATGGACTTTCATCATGCCCTTCTTCTCCTTTGCTCCCCAGTGCCACAAAATCTTCTCCCTTTCTCATTTCCACTTCAAAAATTGCATCTTTCAGGGTCCTTGCTGCTTCCTCTATACCTGATGCTAGAAGTGATGAACCAGCCAAAACTAGTGATTTCTTAAAAACTCTTCAGCTTGGGGCCATGTTTGCAACTTGGTACCTTTTGAACATCTACTACAACATCTACAACAAACAGGTTCTAAAAGTCTATCCATTTCCAGCAACAATTACAGCATTTCAATTTGGCTTTGCATCGTTGGTTATTAATCTAGTCTGGACTTTGAATCTCCATCCCAGACCAAGCATCAGTGGTTCACAGTTTGCAGCAATCCTTCCACTGGCTGTGGCTCACACAATGGGAAACCTCTTGACCAACATTAGTCTTGGCAAGGTTGCTGTATCTTTCACTCACACAATCAAAGCTATGGAGCCTTTCTTCACTGTAGTTCTTTCTGCCCTTTTACTGGGTGAGATGCCTACTTTCTGGGTGGTTTCTTCCCTTGTACCAGTAGTAGGTGGAGTGGCACTGGCATCAATGACTGAAGTCTCTTTCAATTGGATTGGATTCACTACTGCTATGGCATCTAACGTTACTAATCAATCGCGGAACGTTTTGAGCAAAAAACTGATGACTAATGAAGAGGAAACTTTGGACAATATCAATCTCTACTCAGTTATAACTATCATTTCCTTTCTGTTGTTGGTCCCATGTGCTATTCTTGTGGAGGGTGTCAAGTTTTCTCCTTCATACTTGCAATCTGCTGCAAGTCAAGGGCTGAATGTCAGAGAGCTATGTGTCAGATCAGTTCTTGCTGCTTTTTGCTTCCATGCATACCAGCAGGTATCATATATGATATTACAGATGGTGTCACCTGTGACCCACTCTGTTGGAAACTGTGTGAAGCGTGTGGTTGTCATTGTTTCTTCAGTTATATTCTTCCAAATTCCTGTCTCACCCGTTAACACACTTGGAACTGGGCTTGCACTTGTTGGAGTTTTCTTGTACTCAAGGGCAAAGAGGATCAAGTCAGTCCAAAAGACAAATTGA

>Glyma19g00270.1   sequence type=predicted peptide   gene model=Glyma19g00270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPYSLSLLASVSPKMHTLLSFSSSHSPHLPNHNITKSNNKLSHSINGLSSCPSSPLLPSATKSSPFLISTSKIASFRVLAASSIPDARSDEPAKTSDFLKTLQLGAMFATWYLLNIYYNIYNKQVLKVYPFPATITAFQFGFASLVINLVWTLNLHPRPSISGSQFAAILPLAVAHTMGNLLTNISLGKVAVSFTHTIKAMEPFFTVVLSALLLGEMPTFWVVSSLVPVVGGVALASMTEVSFNWIGFTTAMASNVTNQSRNVLSKKLMTNEEETLDNINLYSVITIISFLLLVPCAILVEGVKFSPSYLQSAASQGLNVRELCVRSVLAAFCFHAYQQVSYMILQMVSPVTHSVGNCVKRVVVIVSSVIFFQIPVSPVNTLGTGLALVGVFLYSRAKRIKSVQKTN*







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