SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14620 | AT | Annotation by Michelle Graham. TAIR10: domains rearranged methyltransferase 2 | chr5:4715429-4718578 REVERSE LENGTH=626 | SoyBase | E_val: 0 | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: N-methyltransferase activity | SoyBase | N/A | ISS |
| PTHR23068 | Panther | DNA (CYTOSINE-5-)-METHYLTRANSFERASE 3-RELATED | JGI | ISS | |
| PF00145 | PFAM | C-5 cytosine-specific DNA methylase | JGI | ISS | |
| UniRef100_G7KC46 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA (Cytosine-5)-methyltransferase DRM2 n=1 Tax=Medicago truncatula RepID=G7KC46_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K1I2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1I2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g00250 not represented in the dataset |
Glyma19g00250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g08740 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g006100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g00250.2 sequence type=CDS gene model=Glyma19g00250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGGAGATGATTTTGATTGGAATACTGATGATGAGCTTGAAATTGAGAACTATAACTCTTCATCTTCGTGTTTAACCCTTCCTAATGGGGATGCTGGAGAGGCAAGCTCGTCTGCAGTTTTGGCTAATTCCAAGGTACTTGACCACTTCGTCAACATGGGATTTTCTAGAGAAATGGTTTCTAAAGTAATTCAGGAATATGGTGAAGAAAATGAAGATAAACTACTTGAAGAACTTCTCTCATACAAGGCTCTGGAAAGTTCTCCCCAACCACAGCAGCGAATTGAGCCAGATCCTTGTTCTTCAGAGAATGCAGGGAGCTCTTGGGATGATTTCTCTGATACTGATATTTTTTCTGATGATGAAGAAATTGCAAAAACTATGTCTGAGAATGATGATACCTTACGGTCTTTGGTGAAAATGGGCTACAAACAAGAGGAAGCTTTAGTTGCCATAGAAAGATTAGGCCCAAATGCCTCACTTGAAGAATTGGTAGATTTTATAGGTGTTGCTCAAATGGCAAAGGCTGAGGATGCTCTTCTGCCTCCTGAAGAAAAGTTACAATACAATGACTATGCTAAGTCCAATAAACGAAGATTTTATGATTATGAAGTGCTGGGAAGGAAAAAGCCTAGGGGATGTGAGAAGAAAATCCTCAATGAAGATGATGATGAGGAAGATGAAGCTCTTCATCTTCCAAACCCAATGATTGGGTTTGGTGTACCTACAGAGTCGAGCTTCATAACACACAGAAGGATTCCAGAAGATGCCATTGGGCCTCCTTACTTCTATTATGAGAATGTAGCCTTAGCACCGAAAGGTGTTTGGCAAACAATTTCAAGATTCTTGTATGATGTTCAACCCGAGTTTGTAGATTCAAAGTTTTTCTGTGCTGCAGCCAGGAAAAGGGGATATATTCACAATCTCCCCATCCAAAATAGGTTCCCACTTCTACCACTTCCACCGCGCACAATACACGAGGCTTTTCCCCTAACAAAGAAGTGGTGGCCTTCATGGGATACTAGGACCAAGCTTAATTGTTTGCAAACATGTATTGGCAGTGCAAAACTAACAGAAAGAATTAGGAAAGCTGTAGAAATCTATGATGAAGATCCACCTGAAAGTGTACAGAAGTTTGTTCTTCATCAGTGTAGGAAATGGAATTTGGTTTGGGTGGGAAGGAATAAGGTTGCTCCATTAGAGCCTGATGAAGTAGAAACGCTGCTGGGCTTCCCAAGGAACCACACCAGAGGAGGTGGAATAAGTAGGACTGACAGATACAAGTCACTTGGTAATTCATTCCAGGTTGACACTGTGGCATACCACTTGTCAGTTCTGAAGGAGATGTATCCTAATGGTATCAATCTTCTTTCTCTCTTTTCTGGAATTGGTGGGGCAGAGGTAGCTCTTCATCGGCTCGGCATCCCTCTCAAGAATGTTGTGTCTGTTGAAAAATCAGAAGTGAATAGGAATATTGTTAGAAGTTGGTGGGAGCAAACAAATCAGAAAGGTAATCTATATGACATTGACGATGTAAGGGAGCTAGACGGTGATCGCTTGGAGCAGCTGATGAGCACATTTGGTGGTTTTGATCTAATTGTTGGTGGCAGTCCATGTAATAATCTGGCTGGTAGCAACAGGGTCAGCCGGGATGGACTGGAGGGAAAAGAATCTTCTCTCTTCTTTGATTACTTTAGGATTCTAGACTTAGTAAAAAATATGTCAGCTAAATATCGATAA
>Glyma19g00250.2 sequence type=predicted peptide gene model=Glyma19g00250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGDDFDWNTDDELEIENYNSSSSCLTLPNGDAGEASSSAVLANSKVLDHFVNMGFSREMVSKVIQEYGEENEDKLLEELLSYKALESSPQPQQRIEPDPCSSENAGSSWDDFSDTDIFSDDEEIAKTMSENDDTLRSLVKMGYKQEEALVAIERLGPNASLEELVDFIGVAQMAKAEDALLPPEEKLQYNDYAKSNKRRFYDYEVLGRKKPRGCEKKILNEDDDEEDEALHLPNPMIGFGVPTESSFITHRRIPEDAIGPPYFYYENVALAPKGVWQTISRFLYDVQPEFVDSKFFCAAARKRGYIHNLPIQNRFPLLPLPPRTIHEAFPLTKKWWPSWDTRTKLNCLQTCIGSAKLTERIRKAVEIYDEDPPESVQKFVLHQCRKWNLVWVGRNKVAPLEPDEVETLLGFPRNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKEMYPNGINLLSLFSGIGGAEVALHRLGIPLKNVVSVEKSEVNRNIVRSWWEQTNQKGNLYDIDDVRELDGDRLEQLMSTFGGFDLIVGGSPCNNLAGSNRVSRDGLEGKESSLFFDYFRILDLVKNMSAKYR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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