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Report for Sequence Feature Glyma19g00200

Feature Type:gene_model
Chromosome:Gm19
Start:16183
stop:20526
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g00200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10630AT Annotation by Michelle Graham. TAIR10: ADP-ribosylation factor A1F | chr1:3513189-3514230 REVERSE LENGTH=181 SoyBaseE_val: 4.00E-133ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0007264GO-bp Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
GO:0016004GO-mf Annotation by Michelle Graham. GO Molecular Function: phospholipase activator activity SoyBaseN/AISS
KOG0070 KOG GTP-binding ADP-ribosylation factor Arf1 JGI ISS
PTHR11711Panther ARF-RELATED JGI ISS
PF00025PFAM ADP-ribosylation factor family JGI ISS
UniRef100_A9P9X4UniRef Annotation by Michelle Graham. Best UniRef hit: Predicted protein n=3 Tax=fabids RepID=A9P9X4_POPTR SoyBaseE_val: 5.00E-131ISS
UniRef100_Q677H6UniRef Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q677H6_HYAOR SoyBaseE_val: 1.00E-130ISS

Expression Patterns of Glyma19g00200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g00200
ParalogEvidenceComments
Glyma05g08700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g00200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g006400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g00200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g00200
>Glyma19g00200.5   sequence type=transcript   gene model=Glyma19g00200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGCGACGCCGTATCGAAGACATTTTTGTCATTAAATAACGGTGCGAAGTGTAACTGCGATCTCTCTCTCACTCTTTCTCCGAGAACAAAAAAAAAAAAAAAAAAAATCCGCGATTCGCTCTTCTCTTGGAAAAGTGAAAACCAGAAGTACGAACGAAAGAGAAGAGCGATTTAGAAGTGAGAGAAGATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACTATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCACTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGATCGAGTGGTTGAGGCAAGGGATGAGCTGCACAGAATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATATCCAGAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAAGCATGAGACATTTGAAAAATTTTGGTCTTGTCTGGTGATTTCATGCGAGTCTGGCGGTTCTTGGAGAAAGATGCTTATCTTTTCTAGCGAATGTTGTAATAGCAGAATGCTTGCTAGAAGTATTCTCTTTTGTGTAACTTGGGTTTGTATGATTGCTTAAATTAGCTAATACTTTTAGCTATAATTGGAACTCTTGCACCCTCTTGTGCGTGCGTGCTGTGTTGCTTACATCTTGTTTGTTTGATTTTTGATTGAATATATTTCCATGCGTTTTGTTCTTGAAAAGTTCACTAATTTTTCAGTTTAAAAGATCGGTTTTGTCCGGTTTTCCAAACATTGATAATTAATTGTGTAAACAAACTGTTGGGACTTAATTCTTACATTACACAGGATTTTTATTTTTTTATGTTTCACTTTAATTTTAC

>Glyma19g00200.6   sequence type=transcript   gene model=Glyma19g00200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTCACTCTTTCTCCGAGAACAAAAAAAAAAAAAAAAAAAATCCGCGATTCGCTCTTCTCTTGGAAAAGTGAAAACCAGAAGTACGAACGAAAGAGAAGAGGTAAGCAAATTCAATCCCTCTCCGATTGAATAATCCCTTTCGAATTCGATCTCTCTCTGTTCCAGTTTTTATTTTCTTTCATTTGAATTTTTTAATTATAATGATTGATTTTGGTGTGTGATTGGAATGAAATTGTGATGGATCTGCGATGGATCAGCGATTTAGAAGTGAGAGAAGATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACTATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCACTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGATCGAGTGGTTGAGGCAAGGGATGAGCTGCACAGAATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATATCCAGAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAAGCATGAGACATTTGAAAAATTTTGGTCTTGTCTGGTGATTTCATGCGAGTCTGGCGGTTCTTGGAGAAAGATGCTTATCTTTTCTAGCGAATGTTGTAATAGCAGAATGCTTGCTAGAAGTATTCTCTTTTGTGTAACTTGGGTTTGTATGATTGCTTAAATTAGCTAATACTTTTAGCTATAATTGGAACTCTTGCACCCTCTTGTGCGTGCGTGCTGTGTTGCTTACATCTTGTTTGTTTGATTTTTGATTGAATATATTTCCATGCGTTTTGTTCTTGAAAAGTTCACTAATTTTTCAGTTTAAAAGATCGGTTTTGTCCGGTTTTCCAAACATTGATAATTAATTGTGTAAACAAACTGTTGGGACTTAATTCTTACATTACACAGGA
Coding sequences of Glyma19g00200
>Glyma19g00200.3   sequence type=CDS   gene model=Glyma19g00200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACTATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCACTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGATCGAGTGGTTGAGGCAAGGGATGAGCTGCACAGAATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATATCCAGAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAAGCATGA

>Glyma19g00200.5   sequence type=CDS   gene model=Glyma19g00200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACTATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCACTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGATCGAGTGGTTGAGGCAAGGGATGAGCTGCACAGAATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATATCCAGAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAAGCATGA

>Glyma19g00200.6   sequence type=CDS   gene model=Glyma19g00200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACTATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCACTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGATCGAGTGGTTGAGGCAAGGGATGAGCTGCACAGAATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATATCCAGAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAAGCATGA
Predicted protein sequences of Glyma19g00200
>Glyma19g00200.3   sequence type=predicted peptide   gene model=Glyma19g00200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA*

>Glyma19g00200.5   sequence type=predicted peptide   gene model=Glyma19g00200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA*

>Glyma19g00200.6   sequence type=predicted peptide   gene model=Glyma19g00200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA*






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