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Report for Sequence Feature Glyma18g54070

Feature Type:gene_model
Chromosome:Gm18
Start:62303700
stop:62306867
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g54070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G01910AT Annotation by Michelle Graham. TAIR10: Microtubule associated protein (MAP65/ASE1) family protein | chr2:417698-420182 FORWARD LENGTH=567 SoyBaseE_val: 5.00E-109ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0007020GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule nucleation SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009524GO-cc Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009574GO-cc Annotation by Michelle Graham. GO Cellular Compartment: preprophase band SoyBaseN/AISS
GO:0008017GO-mf Annotation by Michelle Graham. GO Molecular Function: microtubule binding SoyBaseN/AISS
PTHR19321Panther PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED JGI ISS
PF03999PFAM Microtubule associated protein (MAP65/ASE1 family) JGI ISS
UniRef100_B9S7E4UniRef Annotation by Michelle Graham. Most informative UniRef hit: PLE, putative n=1 Tax=Ricinus communis RepID=B9S7E4_RICCO SoyBaseE_val: 4.00E-119ISS
UniRef100_I1L7A6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7A6_SOYBN SoyBaseE_val: 6.00E-152ISS

Expression Patterns of Glyma18g54070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g54070 not represented in the dataset
Glyma18g54070 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g54070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g302300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g54070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g54070
>Glyma18g54070.2   sequence type=transcript   gene model=Glyma18g54070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCGTTTGATTGGTTGTTGTAATTTCTTCCCTTCCTTTAAAAGTACACTATTTTTAAAAATGCAGCTGAAGGATGTTGTAGCAAAACTATTTGAACTTTGGAATTTGATGGACTCTTCAAAAGAAGAGAGAAACTGTTTTATGAAAATTACTTCTATTGTTGAAACCTCAGAATCAGAAATCACTGAACGAGGTGTTCTTTCAACAGAAATGATAGAGAAGGGTTCAGCAGAAGTGGACAGGCTTGCCAAACTAAAAGCAAGCAGAATGAAAGAACTTGTTTTTAAGAAGAGGTCAGAGTTAGAGGAAATATGTAGATTGACTCATATTGAACCAGATCCAAGTACTGTGGCTGAGAAAGCTAGTGCATTAATAGATTCTGGACTGGTGGATCCTTCTGAGCTATTAGCCAAAATCGAAGAACAGATAATTAAGGCAAAAGATGAAGTTTTGAGTAGAAAAGAAGTAACAGATAGGATTGATAAGTGGGTTGCTGCATGTGAAGAGGAGAATTGGCTTGACAAATATAATCAAGATAACAACCGTTACAGTGCTGGGCAATGCGCTCACATTAATCTTAAACGTGCAGAACATGCTAGAATAACTATAGGCAAAATTCCAGCTATAGTTGACAATGTTATAAACAAAACATTAGCCTGGGAAGATGAAAAGAAGACATATTTTCTATATAATAGGGCGAGCTTTGAAGTGCTGTAA
Coding sequences of Glyma18g54070
>Glyma18g54070.1   sequence type=CDS   gene model=Glyma18g54070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGCCATTGGGGGACATGGCACTAGTATCCGCACAAGCTCTACTTGCACGGCTTTGCTCAGAGAACTTGCGGTCTTGCAATGCGTGAATGAGGTGCATTCTCTTTGTAGTGTGCTTGGGTTGGATTTTGGTCAGACCGTGGGTTATGTTCACCGAAGTTTGCATGGGACTCAGCTGAAGGATGTTGTAGCAAAACTATTTGAACTTTGGAATTTGATGGACTCTTCAAAAGAAGAGAGAAACTGTTTTATGAAAATTACTTCTATTGTTGAAACCTCAGAATCAGAAATCACTGAACGAGGTGTTCTTTCAACAGAAATGATAGAGAAGGGTTCAGCAGAAGTGGACAGGCTTGCCAAACTAAAAGCAAGCAGAATGAAAGAACTTGTTTTTAAGAAGAGGTCAGAGTTAGAGGAAATATGTAGATTGACTCATATTGAACCAGATCCAAGTACTGTGGCTGAGAAAGCTAGTGCATTAATAGATTCTGGACTGGTGGATCCTTCTGAGCTATTAGCCAAAATCGAAGAACAGATAATTAAGGCAAAAGATGAAGTTTTGAGTAGAAAAGAAGTAACAGATAGGATTGATAAGTGGGTTGCTGCATGTGAAGAGGAGAATTGGCTTGACAAATATAATCAAGATAACAACCGTTACAGTGCTGGGCAATGCGCTCACATTAATCTTAAACGTGCAGAACATGCTAGAATAACTATAGGCAAAATTCCAGCTATAGTTGACAATGTTATAAACAAAACATTAGCCTGGGAAGATGAAAAGAAGACATATTTTCTATATAATAGGGCGAGCTTTGAAGTGCTGTAA

>Glyma18g54070.2   sequence type=CDS   gene model=Glyma18g54070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCTGAAGGATGTTGTAGCAAAACTATTTGAACTTTGGAATTTGATGGACTCTTCAAAAGAAGAGAGAAACTGTTTTATGAAAATTACTTCTATTGTTGAAACCTCAGAATCAGAAATCACTGAACGAGGTGTTCTTTCAACAGAAATGATAGAGAAGGGTTCAGCAGAAGTGGACAGGCTTGCCAAACTAAAAGCAAGCAGAATGAAAGAACTTGTTTTTAAGAAGAGGTCAGAGTTAGAGGAAATATGTAGATTGACTCATATTGAACCAGATCCAAGTACTGTGGCTGAGAAAGCTAGTGCATTAATAGATTCTGGACTGGTGGATCCTTCTGAGCTATTAGCCAAAATCGAAGAACAGATAATTAAGGCAAAAGATGAAGTTTTGAGTAGAAAAGAAGTAACAGATAGGATTGATAAGTGGGTTGCTGCATGTGAAGAGGAGAATTGGCTTGACAAATATAATCAAGATAACAACCGTTACAGTGCTGGGCAATGCGCTCACATTAATCTTAAACGTGCAGAACATGCTAGAATAACTATAGGCAAAATTCCAGCTATAGTTGACAATGTTATAAACAAAACATTAGCCTGGGAAGATGAAAAGAAGACATATTTTCTATATAATAGGGCGAGCTTTGAAGTGCTGTAA
Predicted protein sequences of Glyma18g54070
>Glyma18g54070.1   sequence type=predicted peptide   gene model=Glyma18g54070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLAIGGHGTSIRTSSTCTALLRELAVLQCVNEVHSLCSVLGLDFGQTVGYVHRSLHGTQLKDVVAKLFELWNLMDSSKEERNCFMKITSIVETSESEITERGVLSTEMIEKGSAEVDRLAKLKASRMKELVFKKRSELEEICRLTHIEPDPSTVAEKASALIDSGLVDPSELLAKIEEQIIKAKDEVLSRKEVTDRIDKWVAACEEENWLDKYNQDNNRYSAGQCAHINLKRAEHARITIGKIPAIVDNVINKTLAWEDEKKTYFLYNRASFEVL*

>Glyma18g54070.2   sequence type=predicted peptide   gene model=Glyma18g54070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLKDVVAKLFELWNLMDSSKEERNCFMKITSIVETSESEITERGVLSTEMIEKGSAEVDRLAKLKASRMKELVFKKRSELEEICRLTHIEPDPSTVAEKASALIDSGLVDPSELLAKIEEQIIKAKDEVLSRKEVTDRIDKWVAACEEENWLDKYNQDNNRYSAGQCAHINLKRAEHARITIGKIPAIVDNVINKTLAWEDEKKTYFLYNRASFEVL*






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