Glyma18g54020 - SoyBase

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Report for Sequence Feature Glyma18g54020

Feature Type:	gene_model
Chromosome:	Gm18
Start:	62277943
stop:	62281206
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g54020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39290	AT	Annotation by Michelle Graham. TAIR10: phosphatidylglycerolphosphate synthase 1 \| chr2:16407274-16408840 FORWARD LENGTH=296	SoyBase	E_val: 8.00E-96	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0008654	GO-bp	Annotation by Michelle Graham. GO Biological Process: phospholipid biosynthetic process	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008444	GO-mf	Annotation by Michelle Graham. GO Molecular Function: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity	SoyBase	N/A	ISS
GO:0016780	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, for other substituted phosphate groups	SoyBase	N/A	ISS
GO:0017169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: CDP-alcohol phosphatidyltransferase activity	SoyBase	N/A	ISS
KOG1617	KOG	CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase	JGI		ISS
PTHR14269	Panther	CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED	JGI		ISS
PF01066	PFAM	CDP-alcohol phosphatidyltransferase	JGI		ISS
UniRef100_C6TC70	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=2 Tax=Glycine max RepID=C6TC70_SOYBN	SoyBase	E_val: 3.00E-155	ISS
UniRef100_Q07A04	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylglycerolphosphate synthase n=1 Tax=Vigna unguiculata RepID=Q07A04_VIGUN	SoyBase	E_val: 5.00E-104	ISS

Expression Patterns of Glyma18g54020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g54020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g302100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g54020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g54020

Limit To All Plant Sequences

>Glyma18g54020.3   sequence type=transcript   gene model=Glyma18g54020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGATCAAAAACTCAAAATAAGAACGCCAATTCTATGAAGAAGAGTTGAGTTGGAGAAGAAGAAAAGAACATGAAAGGGGAGGATCTGGACTTGCGCTGACTACGGGAGAAAAAAGAGGAAGAACGGAAGTAGAGGATTGGAAGAAGATAGAAGGGGTAGGTTGGGGTTTTTAAAATAGTAGGAGGTGCAGGATGCAATAAGGGAGGTGCAGATTTCAATTGCCCATCCTTAGAAGGAGAGAAATGCTCGGTAGTTATTTGTCAAAAAGAAATCACAAGGGTTTGGTGTTGGGGGCCAACAATACGACCTGCGTCTGTGTAATTGTAGGTGCCAAACATATGGTTGCCGAGATGAATGTCCGTGAATTTTCCATCTCTAAGAATGACCGTACTTCAAATTCCAATTCCAAATTTCTTACCTTGCCCACCATTTTGACTCTTGGCCGTGTCGCCGCTGTACCTCTTCTTGTTGCCACCTTCTACATGGATGGTTGGCGAGGAACAGTTGTTACTACAAGTATCTTCACTGCTGCAGCAGTTACAGATTGGCTTGATGGTTATATTGCTCGTAAGATGAAAATGAAATCTACATTTGGTGCCTTTTTAGATCCAGTAGCTGACAAGCTTATGGTTTCTGCCACATTGGTCTTATTATGTACTAGACCGTTGGAAGTTGCTGTGTTTCGACAAGTACCATGGCTATTGATTATACCTTCAATCACCATAATTGGCAGAGAGATAACCATGTCGGCACTCAGGGAATGGGCTGCTTCCCAGGGTAGCAAGCTTCTGGAGTTAATAATTTGGGGAAATGGAAAACAGCATCACAGATGGTGGCGTTAATCATCCTCCTTGCTACCCGGGACTGCAGTCGTGGAGGACCTGCTATTTTGGTGGGATCTGGGGTTGTCTTGCTTTACATTTCCGCAGGGCTTGCCTTATGGTCATTTGTAGTATATATGAGAGAAATATGCAAGGTGTTGCGGAGGTAGCATGTTTGATTGCTCTCTGCCTTCACATATATCCGCTTGTTTGGTGGGTTTTATTCTTTTGATCATTTCTTACGTAAACAGTTTAGTTAGTGATTCCATGGAAGGGAATGTAGTCCTTGTGAGTTGTGACCAATATATATAATGTTTGCTCTCCACAATGTCTAACTCTGCAAAGCACCATTCCTCCTATTCTTGAAAATTGTATTGTTTTTCCCCCTTAGTTACCACTGGTAAAGGAAAGATGGAAAAAAAGAAAGAAAGATGACATGTGGATTGAATTGGAAGAATTCAGGTTACTAGTCACGCGAATCGAATTCCTATCTACAGTTTGGAGCCTATTAAAGTTTGCTACCTGAGAAATTTCGCCAGAGGAATCAATGTATGGTTCTAGTTGACTCTTAAATTGATTTTTGTCCTGGTCATATTATTTGCCAATACTTAAATACAACAGTTATTTTTCAGTGTCTGCACATGTTTAATATTCCATGCAATTTGACTTTACTTTTTTTTTTTT

Coding sequences of Glyma18g54020

Limit To All Plant Sequences

>Glyma18g54020.2   sequence type=CDS   gene model=Glyma18g54020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCGGTAGTTATTTGTCAAAAAGAAATCACAAGGGTTTGGTGTTGGGGGCCAACAATACGACCTGCGTCTGTGTAATTGTAGGTGCCAAACATATGGTTGCCGAGATGAATGTCCGTGAATTTTCCATCTCTAAGAATGACCGTACTTCAAATTCCAATTCCAAATTTCTTACCTTGCCCACCATTTTGACTCTTGGCCGTGTCGCCGCTGTACCTCTTCTTGTTGCCACCTTCTACATGGATGGTTGGCGAGGAACAGTTGTTACTACAAGTATCTTCACTGCTGCAGCAGTTACAGATTGGCTTGATGGTTATATTGCTCGTAAGATGAAAATGAAATCTACATTTGGTGCCTTTTTAGATCCAGTAGCTGACAAGCTTATGGTTTCTGCCACATTGGTCTTATTATGTACTAGACCGTTGGAAGTTGCTGTGTTTCGACAAGTACCATGGCTATTGATTATACCTTCAATCACCATAATTGGCAGAGAGATAACCATGTCGGCACTCAGGGAATGGGCTGCTTCCCAGGGTAGCAAGCTTCTGGAGGTTGTTGCAGTTAATAATTTGGGGAAATGGAAAACAGCATCACAGATGGTGGCGTTAATCATCCTCCTTGCTACCCGGGACTGCAGTCGTGGAGGACCTGCTATTTTGGTGGGATCTGGGGTTGTCTTGCTTTACATTTCCGCAGGGCTTGCCTTATGGTCATTTGTAGTATATATGAGAGAAATATGCAAGGTGTTGCGGAGGTAG

>Glyma18g54020.3   sequence type=CDS   gene model=Glyma18g54020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCGGTAGTTATTTGTCAAAAAGAAATCACAAGGGTTTGGTGTTGGGGGCCAACAATACGACCTGCGTCTGTGTAATTGTAGGTGCCAAACATATGGTTGCCGAGATGAATGTCCGTGAATTTTCCATCTCTAAGAATGACCGTACTTCAAATTCCAATTCCAAATTTCTTACCTTGCCCACCATTTTGACTCTTGGCCGTGTCGCCGCTGTACCTCTTCTTGTTGCCACCTTCTACATGGATGGTTGGCGAGGAACAGTTGTTACTACAAGTATCTTCACTGCTGCAGCAGTTACAGATTGGCTTGATGGTTATATTGCTCGTAAGATGAAAATGAAATCTACATTTGGTGCCTTTTTAGATCCAGTAGCTGACAAGCTTATGGTTTCTGCCACATTGGTCTTATTATGTACTAGACCGTTGGAAGTTGCTGTGTTTCGACAAGTACCATGGCTATTGATTATACCTTCAATCACCATAATTGGCAGAGAGATAACCATGTCGGCACTCAGGGAATGGGCTGCTTCCCAGGGTAGCAAGCTTCTGGAGTTAATAATTTGGGGAAATGGAAAACAGCATCACAGATGGTGGCGTTAA

Predicted protein sequences of Glyma18g54020

Limit To All Plant Sequences

>Glyma18g54020.2   sequence type=predicted peptide   gene model=Glyma18g54020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGSYLSKRNHKGLVLGANNTTCVCVIVGAKHMVAEMNVREFSISKNDRTSNSNSKFLTLPTILTLGRVAAVPLLVATFYMDGWRGTVVTTSIFTAAAVTDWLDGYIARKMKMKSTFGAFLDPVADKLMVSATLVLLCTRPLEVAVFRQVPWLLIIPSITIIGREITMSALREWAASQGSKLLEVVAVNNLGKWKTASQMVALIILLATRDCSRGGPAILVGSGVVLLYISAGLALWSFVVYMREICKVLRR*

>Glyma18g54020.3   sequence type=predicted peptide   gene model=Glyma18g54020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGSYLSKRNHKGLVLGANNTTCVCVIVGAKHMVAEMNVREFSISKNDRTSNSNSKFLTLPTILTLGRVAAVPLLVATFYMDGWRGTVVTTSIFTAAAVTDWLDGYIARKMKMKSTFGAFLDPVADKLMVSATLVLLCTRPLEVAVFRQVPWLLIIPSITIIGREITMSALREWAASQGSKLLELIIWGNGKQHHRWWR*

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