Glyma18g54010 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma18g54010): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma18g54010): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma18g54010

Feature Type:	gene_model
Chromosome:	Gm18
Start:	62256184
stop:	62259914
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g54010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33510	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). \| chr2:14194195-14195473 FORWARD LENGTH=189	SoyBase	E_val: 6.00E-49	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_B7FMU4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Humj1 n=1 Tax=Medicago truncatula RepID=B7FMU4_MEDTR	SoyBase	E_val: 6.00E-54	ISS
UniRef100_C6TL16	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TL16_SOYBN	SoyBase	E_val: 2.00E-143	ISS

Expression Patterns of Glyma18g54010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g54010 not represented in the dataset	Glyma18g54010 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g54010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g302000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g54010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g54010

Limit To All Plant Sequences

>Glyma18g54010.2   sequence type=transcript   gene model=Glyma18g54010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGGATTAGAATTGTGAGTTTAAGAAATATTTGTAATGTTATTATAGTTTTAATATTTGTGATTGGAAGACAAGAAAGGCTCCAGAAAAGCGCGTGAAGTTTGCAGCCAAAGCAGCGAAGCGAGACAAAATGCAACCCACAGTGGTTCCCTGGAGCTGACAGGTGGTACCCCACATCGTTTACATGAGCGTTCCACACGCGCAGACGGAGAGCGTATGAGATGGATCTGTTTCTACCCTTAAATGAACAACAATGTGAATAATATAATATATCGATCCCAAGCCTCCCTCCGTAGCCAGTTAGTTCTCATTTCTAATATTGCTTCCAAAATCTCTCTCTCTCTCTCTCTCTGGGGGGTATGTGTGTTGTTCAGTACAACTAGTTTTGGTATAGCTAGCTGCTCTTCATTTGATTTTGCTCGCAGTCGCAGCTCCAATCCAAATATGGAGGCGATCACTGCTTCCTTAGAGAGGTCTCTTCAAAACTGTTCCTTAAACAATACCAACAACAACCATCAGCAGAGCAGGAGGCCGGAAGAAGATGATGGGTCAGCTACAGATGGAGGCATAGGAATCTCATCCTGCTCAGACGATGTCCCGGACCCGGATAATAGTCATATCTCCGACACCACTTTAGAGCTCAACTCCCACATCTCACTCCCTTATCATTGGGAGCAATGCCTAGATTTAAAGACGGGGGAAATATATTACATTAACTGGAGGAACGGGATGAAAGCAAAGGAGGATCCAAGAAGCAGGAGGGCAGATTATAGTGTAAGTAGGGATTGTGAGTCCGAAGAAGAAGAAGAAGAAGAGAGCTGGTACGACAGCGAAGAGTCTTCATCGGAGTCATGCCCTTCTTCATCCAAAGAGCACTATGATGAGGGACAGGTAGAGAAACAGAATAACAATGTTCTGGTGGTGGCTGGGTGCAAGGGCTGTCTCATGTATTTCATGGTGCCCAAACAGGTTGAAGACTGCCCAAAATGTACTGGTCAACTCCTCCACTTCGATCGATCCGAAAATGGCTCTCCATGATTAATTCCCACTCCTCTTTTCTCCTTGTGTTTCCTTCTTCGCTTCTCTTTTCTTTTTGCTGTGACTGTCAAATTAAACTATAGTTCTCTCTTTTTTTGTTTATTATTTTTTCCATGAAATTTTCAACTAAGAGACCCTTCCTCGCATTTCGATTTTCAGACTAGCTTTTCATTAAATTACTGTTATTAATTTTACATTTTGCGGTCCTCAATAAATAAAATGACATATATTCGGTCAATATCTACAGTGCTGGCAGTAAGGTCAGTTTTAGAAGAACGAAAGAATAATATTTGTAATGATTGCGACGTGTAGTGTTCGTGCCTTTTCTTATATTACATTAAAATAAAATTAAAATTCATGTA

>Glyma18g54010.3   sequence type=transcript   gene model=Glyma18g54010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATACTTCAATTTATCGGATGATTGCCAATTTATATTAAGAGACAAGAAAGGCTCCAGAAAAGCGCGTGAAGTTTGCAGCCAAAGCAGCGAAGCGAGACAAAATGCAACCCACAGTGGTTCCCTGGAGCTGACAGGTGGTACCCCACATCGTTTACATGAGCGTTCCACACGCGCAGACGGAGAGCGTATGAGATGGATCTGTTTCTACCCTTAAATGAACAACAATGTGAATAATATAATATATCGATCCCAAGCCTCCCTCCGTAGCCAGTTAGTTCTCATTTCTAATATTGCTTCCAAAATCTCTCTCTCTCTCTCTCTCTGGGGGGTATGTGTGTTGTTCAGTACAACTAGTTTTGGTATAGCTAGCTGCTCTTCATTTGATTTTGCTCGCAGTCGCAGCTCCAATCCAAATATGGAGGCGATCACTGCTTCCTTAGAGAGGTCTCTTCAAAACTGTTCCTTAAACAATACCAACAACAACCATCAGCAGAGCAGGAGGCCGGAAGAAGATGATGGGTCAGCTACAGATGGAGGCATAGGAATCTCATCCTGCTCAGACGATGTCCCGGACCCGGATAATAGTCATATCTCCGACACCACTTTAGAGCTCAACTCCCACATCTCACTCCCTTATCATTGGGAGCAATGCCTAGATTTAAAGACGGGGGAAATATATTACATTAACTGGAGGAACGGGATGAAAGCAAAGGAGGATCCAAGAAGCAGGAGGGCAGATTATAGTGTAAGTAGGGATTGTGAGTCCGAAGAAGAAGAAGAAGAAGAGAGCTGGTACGACAGCGAAGAGTCTTCATCGGAGTCATGCCCTTCTTCATCCAAAGAGCACTATGATGAGGGACAGGTAGAGAAACAGAATAACAATGTTCTGGTGGTGGCTGGGTGCAAGGGCTGTCTCATGTATTTCATGGTGCCCAAACAGGTTGAAGACTGCCCAAAATGTACTGGTCAACTCCTCCACTTCGATCGATCCGAAAATGGCTCTCCATGATTAATTCCCACTCCTCTTTTCTCCTTGTGTTTCCTTCTTCGCTTCTCTTTTCTTTTTGCTGTGACTGTCAAATTAAACTATAGTTCTCTCTTTTTTTGTTTATTATTTTTTCCATGAAATTTTCAACTAAGAGACCCTTCCTCGCATTTCGATTTTCAGACTAGCTTTTCATTAAATTACTGTTATTAATTTTACATTTTGCGGTCCTCAATAAATAAAATGACATATATTCGGTCAATATCTACAGTGCTGGCAGTAAGGTCAGTTTTAGAAGAACGAAAGAATAATATTTGTAATGATTGCGACGTGTAGTGTTCGTGCCTTTTCTTATATTACATTAAAATAAAATTAAAATTCATGTA

>Glyma18g54010.4   sequence type=transcript   gene model=Glyma18g54010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATAAGGACCAGTTGCGGTTAAACAAAGTTGTGTTGTTGAAGTTTTAATATTTGTGATTGGAAGACAAGAAAGGCTCCAGAAAAGCGCGTGAAGTTTGCAGCCAAAGCAGCGAAGCGAGACAAAATGCAACCCACAGTGGTTCCCTGGAGCTGACAGGTGGTACCCCACATCGTTTACATGAGCGTTCCACACGCGCAGACGGAGAGCGTATGAGATGGATCTGTTTCTACCCTTAAATGAACAACAATGTGAATAATATAATATATCGATCCCAAGCCTCCCTCCGTAGCCAGTTAGTTCTCATTTCTAATATTGCTTCCAAAATCTCTCTCTCTCTCTCTCTCTGGGGGGTATGTGTGTTGTTCAGTACAACTAGTTTTGGTATAGCTAGCTGCTCTTCATTTGATTTTGCTCGCAGTCGCAGCTCCAATCCAAATATGGAGGCGATCACTGCTTCCTTAGAGAGGTCTCTTCAAAACTGTTCCTTAAACAATACCAACAACAACCATCAGCAGAGCAGGAGGCCGGAAGAAGATGATGGGTCAGCTACAGATGGAGGCATAGGAATCTCATCCTGCTCAGACGATGTCCCGGACCCGGATAATAGTCATATCTCCGACACCACTTTAGAGCTCAACTCCCACATCTCACTCCCTTATCATTGGGAGCAATGCCTAGATTTAAAGACGGGGGAAATATATTACATTAACTGGAGGAACGGGATGAAAGCAAAGGAGGATCCAAGAAGCAGGAGGGCAGATTATAGTGTAAGTAGGGATTGTGAGTCCGAAGAAGAAGAAGAAGAAGAGAGCTGGTACGACAGCGAAGAGTCTTCATCGGAGTCATGCCCTTCTTCATCCAAAGAGCACTATGATGAGGGACAGGTAGAGAAACAGAATAACAATGTTCTGGTGGTGGCTGGGTGCAAGGGCTGTCTCATGTATTTCATGGTGCCCAAACAGGTTGAAGACTGCCCAAAATGTACTGGTCAACTCCTCCACTTCGATCGATCCGAAAATGGCTCTCCATGATTAATTCCCACTCCTCTTTTCTCCTTGTGTTTCCTTCTTCGCTTCTCTTTTCTTTTTGCTGTGACTGTCAAATTAAACTATAGTTCTCTCTTTTTTTGTTTATTATTTTTTCCATGAAATTTTCAACTAAGAGACCCTTCCTCGCATTTCGATTTTCAGACTAGCTTTTCATTAAATTACTGTTATTAATTTTACATTTTGCGGTCCTCAATAAATAAAATGACATATATTCGGTCAATATCTACAGTGCTGGCAGTAAGGTCAGTTTTAGAAGAACGAAAGAATAATATTTGTAATGATTGCGACGTGTAGTGTTCGTGCCTTTTCTTATATTACATTAAAATAAAATTAAAATTCATGTA

Coding sequences of Glyma18g54010

Limit To All Plant Sequences

>Glyma18g54010.1   sequence type=CDS   gene model=Glyma18g54010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCGATCACTGCTTCCTTAGAGAGGTCTCTTCAAAACTGTTCCTTAAACAATACCAACAACAACCATCAGCAGAGCAGGAGGCCGGAAGAAGATGATGGGTCAGCTACAGATGGAGGCATAGGAATCTCATCCTGCTCAGACGATGTCCCGGACCCGGATAATAGTCATATCTCCGACACCACTTTAGAGCTCAACTCCCACATCTCACTCCCTTATCATTGGGAGCAATGCCTAGATTTAAAGACGGGGGAAATATATTACATTAACTGGAGGAACGGGATGAAAGCAAAGGAGGATCCAAGAAGCAGGAGGGCAGATTATAGTGTAAGTAGGGATTGTGAGTCCGAAGAAGAAGAAGAAGAAGAGAGCTGGTACGACAGCGAAGAGTCTTCATCGGAGTCATGCCCTTCTTCATCCAAAGAGCACTATGATGAGGGACAGGTAGAGAAACAGAATAACAATGTTCTGGTGGTGGCTGGGTGCAAGGGCTGTCTCATGTATTTCATGGTGCCCAAACAGGTTGAAGACTGCCCAAAATGTACTGGTCAACTCCTCCACTTCGATCGATCCGAAAATGGCTCTCCATGA

>Glyma18g54010.2   sequence type=CDS   gene model=Glyma18g54010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAACAATGTGAATAATATAATATATCGATCCCAAGCCTCCCTCCGTAGCCAGTTAGTTCTCATTTCTAATATTGCTTCCAAAATCTCTCTCTCTCTCTCTCTCTGGGGGGTATGTGTGTTGTTCAGTACAACTAGTTTTGGTATAGCTAGCTGCTCTTCATTTGATTTTGCTCGCAGTCGCAGCTCCAATCCAAATATGGAGGCGATCACTGCTTCCTTAGAGAGGTCTCTTCAAAACTGTTCCTTAAACAATACCAACAACAACCATCAGCAGAGCAGGAGGCCGGAAGAAGATGATGGGTCAGCTACAGATGGAGGCATAGGAATCTCATCCTGCTCAGACGATGTCCCGGACCCGGATAATAGTCATATCTCCGACACCACTTTAGAGCTCAACTCCCACATCTCACTCCCTTATCATTGGGAGCAATGCCTAGATTTAAAGACGGGGGAAATATATTACATTAACTGGAGGAACGGGATGAAAGCAAAGGAGGATCCAAGAAGCAGGAGGGCAGATTATAGTGTAAGTAGGGATTGTGAGTCCGAAGAAGAAGAAGAAGAAGAGAGCTGGTACGACAGCGAAGAGTCTTCATCGGAGTCATGCCCTTCTTCATCCAAAGAGCACTATGATGAGGGACAGGTAGAGAAACAGAATAACAATGTTCTGGTGGTGGCTGGGTGCAAGGGCTGTCTCATGTATTTCATGGTGCCCAAACAGGTTGAAGACTGCCCAAAATGTACTGGTCAACTCCTCCACTTCGATCGATCCGAAAATGGCTCTCCATGA

>Glyma18g54010.3   sequence type=CDS   gene model=Glyma18g54010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAACAATGTGAATAATATAATATATCGATCCCAAGCCTCCCTCCGTAGCCAGTTAGTTCTCATTTCTAATATTGCTTCCAAAATCTCTCTCTCTCTCTCTCTCTGGGGGGTATGTGTGTTGTTCAGTACAACTAGTTTTGGTATAGCTAGCTGCTCTTCATTTGATTTTGCTCGCAGTCGCAGCTCCAATCCAAATATGGAGGCGATCACTGCTTCCTTAGAGAGGTCTCTTCAAAACTGTTCCTTAAACAATACCAACAACAACCATCAGCAGAGCAGGAGGCCGGAAGAAGATGATGGGTCAGCTACAGATGGAGGCATAGGAATCTCATCCTGCTCAGACGATGTCCCGGACCCGGATAATAGTCATATCTCCGACACCACTTTAGAGCTCAACTCCCACATCTCACTCCCTTATCATTGGGAGCAATGCCTAGATTTAAAGACGGGGGAAATATATTACATTAACTGGAGGAACGGGATGAAAGCAAAGGAGGATCCAAGAAGCAGGAGGGCAGATTATAGTGTAAGTAGGGATTGTGAGTCCGAAGAAGAAGAAGAAGAAGAGAGCTGGTACGACAGCGAAGAGTCTTCATCGGAGTCATGCCCTTCTTCATCCAAAGAGCACTATGATGAGGGACAGGTAGAGAAACAGAATAACAATGTTCTGGTGGTGGCTGGGTGCAAGGGCTGTCTCATGTATTTCATGGTGCCCAAACAGGTTGAAGACTGCCCAAAATGTACTGGTCAACTCCTCCACTTCGATCGATCCGAAAATGGCTCTCCATGA

>Glyma18g54010.4   sequence type=CDS   gene model=Glyma18g54010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAACAATGTGAATAATATAATATATCGATCCCAAGCCTCCCTCCGTAGCCAGTTAGTTCTCATTTCTAATATTGCTTCCAAAATCTCTCTCTCTCTCTCTCTCTGGGGGGTATGTGTGTTGTTCAGTACAACTAGTTTTGGTATAGCTAGCTGCTCTTCATTTGATTTTGCTCGCAGTCGCAGCTCCAATCCAAATATGGAGGCGATCACTGCTTCCTTAGAGAGGTCTCTTCAAAACTGTTCCTTAAACAATACCAACAACAACCATCAGCAGAGCAGGAGGCCGGAAGAAGATGATGGGTCAGCTACAGATGGAGGCATAGGAATCTCATCCTGCTCAGACGATGTCCCGGACCCGGATAATAGTCATATCTCCGACACCACTTTAGAGCTCAACTCCCACATCTCACTCCCTTATCATTGGGAGCAATGCCTAGATTTAAAGACGGGGGAAATATATTACATTAACTGGAGGAACGGGATGAAAGCAAAGGAGGATCCAAGAAGCAGGAGGGCAGATTATAGTGTAAGTAGGGATTGTGAGTCCGAAGAAGAAGAAGAAGAAGAGAGCTGGTACGACAGCGAAGAGTCTTCATCGGAGTCATGCCCTTCTTCATCCAAAGAGCACTATGATGAGGGACAGGTAGAGAAACAGAATAACAATGTTCTGGTGGTGGCTGGGTGCAAGGGCTGTCTCATGTATTTCATGGTGCCCAAACAGGTTGAAGACTGCCCAAAATGTACTGGTCAACTCCTCCACTTCGATCGATCCGAAAATGGCTCTCCATGA

Predicted protein sequences of Glyma18g54010

Limit To All Plant Sequences

>Glyma18g54010.1   sequence type=predicted peptide   gene model=Glyma18g54010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAITASLERSLQNCSLNNTNNNHQQSRRPEEDDGSATDGGIGISSCSDDVPDPDNSHISDTTLELNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSRRADYSVSRDCESEEEEEEESWYDSEESSSESCPSSSKEHYDEGQVEKQNNNVLVVAGCKGCLMYFMVPKQVEDCPKCTGQLLHFDRSENGSP*

>Glyma18g54010.2   sequence type=predicted peptide   gene model=Glyma18g54010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNNVNNIIYRSQASLRSQLVLISNIASKISLSLSLWGVCVLFSTTSFGIASCSSFDFARSRSSNPNMEAITASLERSLQNCSLNNTNNNHQQSRRPEEDDGSATDGGIGISSCSDDVPDPDNSHISDTTLELNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSRRADYSVSRDCESEEEEEEESWYDSEESSSESCPSSSKEHYDEGQVEKQNNNVLVVAGCKGCLMYFMVPKQVEDCPKCTGQLLHFDRSENGSP*

>Glyma18g54010.3   sequence type=predicted peptide   gene model=Glyma18g54010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNNVNNIIYRSQASLRSQLVLISNIASKISLSLSLWGVCVLFSTTSFGIASCSSFDFARSRSSNPNMEAITASLERSLQNCSLNNTNNNHQQSRRPEEDDGSATDGGIGISSCSDDVPDPDNSHISDTTLELNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSRRADYSVSRDCESEEEEEEESWYDSEESSSESCPSSSKEHYDEGQVEKQNNNVLVVAGCKGCLMYFMVPKQVEDCPKCTGQLLHFDRSENGSP*

>Glyma18g54010.4   sequence type=predicted peptide   gene model=Glyma18g54010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNNVNNIIYRSQASLRSQLVLISNIASKISLSLSLWGVCVLFSTTSFGIASCSSFDFARSRSSNPNMEAITASLERSLQNCSLNNTNNNHQQSRRPEEDDGSATDGGIGISSCSDDVPDPDNSHISDTTLELNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSRRADYSVSRDCESEEEEEEESWYDSEESSSESCPSSSKEHYDEGQVEKQNNNVLVVAGCKGCLMYFMVPKQVEDCPKCTGQLLHFDRSENGSP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain