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Report for Sequence Feature Glyma18g53954

Feature Type:gene_model
Chromosome:Gm18
Start:62216823
stop:62219182
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g53954
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13180AT Annotation by Michelle Graham. TAIR10: NAC domain containing protein 83 | chr5:4196643-4197577 FORWARD LENGTH=252 SoyBaseE_val: 8.00E-100ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0007275GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organismal development SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0009963GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process SoyBaseN/AISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF02365PFAM No apical meristem (NAM) protein JGI ISS
UniRef100_B2ZGQ7UniRef Annotation by Michelle Graham. Best UniRef hit: NAC domain protein n=2 Tax=Glycine max RepID=B2ZGQ7_SOYBN SoyBaseE_val: 9.00E-171ISS
UniRef100_B2ZGQ7UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=2 Tax=Glycine max RepID=B2ZGQ7_SOYBN SoyBaseE_val: 9.00E-171ISS

Expression Patterns of Glyma18g53954
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g53954 not represented in the dataset
Glyma18g53954 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53954
ParalogEvidenceComments
Glyma08g47520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53954 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g301500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g53954
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g53954
>Glyma18g53954.1   sequence type=CDS   gene model=Glyma18g53954   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGGTGAGTTTTGTGAAGAATGGAGAGCTTAGATTGCCTCCGGGGTTTCGTTTCCACCCGACTGATGAGGAGCTGGTTTTGCAGTACTTGAAGCGCAAGGTCTTCTCCTGCCCTCTGCCAGCCTCTATCATTCCTGAGGTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAGATACTTCTTTAGCACCAAAGAGGCCAAATATCCCAACGGAAATCGCTCTAACAGAGCCACAAATTCGGGTTATTGGAAGGCAACTGGCTTGGACAAACAAATTGTTACTTCAAAAGGGAACCAAGTTGTGGGGATGAAGAAGACACTTGTTTTCTACAGAGGCAAGCCTCCTCATGGATCCAGAACTGATTGGATCATGCATGAGTATCGCCTCAACATCCTTAACGCCTCTCAGAGCCATGTTCCCATGGAAAATTGGGTTCTATGTCGCATATTTTTGAAGAAGAGAAGCGGTGCTAAAAATGGGGAGGAGAGCAACAAGGTGAGGAACTCTAAGGTGGTTTTCTATGACTTCCTAGCGCAGAACAAGACTGATTCCTCATCCTCGGCCGCCAGTGGAATTACACATGAACATGAATCAGATGAACATGACCATGAAGAGAGCAGTAGCTCCAACACCTTCCCTTATACTATTAGAACGAAACCTTAA
Predicted protein sequences of Glyma18g53954
>Glyma18g53954.1   sequence type=predicted peptide   gene model=Glyma18g53954   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKVSFVKNGELRLPPGFRFHPTDEELVLQYLKRKVFSCPLPASIIPEVDVCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLNILNASQSHVPMENWVLCRIFLKKRSGAKNGEESNKVRNSKVVFYDFLAQNKTDSSSSAASGITHEHESDEHDHEESSSSNTFPYTIRTKP*






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