Glyma18g53880 - SoyBase

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Report for Sequence Feature Glyma18g53880

Feature Type:	gene_model
Chromosome:	Gm18
Start:	62142617
stop:	62150073
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05820	AT	Annotation by Michelle Graham. TAIR10: SIGNAL PEPTIDE PEPTIDASE-LIKE 5 \| chr1:1749776-1753767 FORWARD LENGTH=536	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
KOG2442	KOG	Uncharacterized conserved protein, contains PA domain	JGI		ISS
PTHR12174	Panther	SIGNAL PEPTIDE PEPTIDASE	JGI		ISS
PTHR12174:SF30	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF02225	PFAM	PA domain	JGI		ISS
PF04258	PFAM	Signal peptide peptidase	JGI		ISS
UniRef100_B9SUL7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Minor histocompatibility antigen H13, putative n=1 Tax=Ricinus communis RepID=B9SUL7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F424	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F424 related cluster n=1 Tax=unknown RepID=UPI000233F424	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g53880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53880

Paralog	Evidence	Comments
Glyma08g47600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g300700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g53880

Limit To All Plant Sequences

>Glyma18g53880.1   sequence type=CDS   gene model=Glyma18g53880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTTTCGTGTGTTGCTGTTACTGGTGGTGTTGTTGTTTGTGATTGGCGCGGGCGCCGACGATGCCAAACGCGACGACGACAGGGCTCCCAAGTCGGAATCCTGCAATAACCCCTTCCAATTGGTGAAGGTGGAGAGCTGGGTGGACGGTGAGGAAGGGCATGTCCACAATGGCGTCAGTGCCAGATTTGGGTCTGTGTTGCCGGACAAACCTGACAAGAGTGTCAGAACTCCCGCAATATTCGCTAATCCCATAGACTGCTGTTCCAATTCAACTTCAAAGTTATCTGGCTCAGTTGCTCTCTGTGTCCGTGGGGGCTGTGACTTCACTGTTAAAGCTTATTTTGCTCAATCTGGAGCTGCTACTGCCATCTTGGTCATTAACGACTCACAAGATCTCTTTGAGATGGTTTGCTCCAATAGCAGTGAAGCAAATATTTCAATTCCAGTAGTCATGATAGCAAAGTCAGCAGGACAATCTCTCAACAAGTCTTTCACATCTGGAAGCAAAGTGGAAATTTTGTTATATGCTCCGCCTCGGCCACTTGTGGACTTCTCAGTTGCATTTTTGTGGTTGATGTCTGTTGGAACTATTGTATGTGCTTCACTATGGTCCGATCTGACTACCCCAGAGAAGTCTGATGAACGCTATAACAAATTGTGCCCCAAGGAATCTTCTAATGCTGAAACAGAAAAAGATGATTTGGACAAGGAAATTGTTAACATTGATTCAAAGGGTGCTGTCATATTTGTCATAGCAGCGTCTACCTTTCTTGTGCTATTGTTCTTCTTCATGTCAACTTGGTTTGTCTGGGTGCTGATTGTACTTTTCTGCATTGGTGGTATTGAGGGTATGCACAATTGTATTGTAAGCCTCACTTTAAGAAAATGCCAAAATTGTGGTCAGAAGACAGTGAGCTTACCTCTATTTGGGGAGATTTCTATTTTCTCCCTGGCAGTATTGTTATTCTGTGTGGCATTTGCAATTTTCTGGGCTGCTACTCGACAGGAATCATATTCATGGACTGGCCAAGATATCCTTGGCATCTGTTTGATGATAACAGTCTTGCAGTTGGCTCGATTACCTAATATTAAGGTTGCAACTGTACTCCTTTGTTGTGCTTTTGTCTATGACATTTTTTGGGTATTCATATCTCCAGTGATTTTCCATGAGAGTGTTATGATTGCAGTTGCTCGAGGTGACAAGGCTGGTGGGGAAGCAATTCCTATGCTTTTGAGATTTCCTCGTCTTTTTGATCCCTGGGGAGGTTATGACATGATTGGATTTGGAGATATTCTGTTTCCTGGTTTGCTTATTTCCTTTGCTCATAGATTCGACAAAGATAATGGAAGGGGAGCATCAAATGGATATTTTCTTTGGTTGGTAGTTGGCTATGGCATCGGCCTCGTTTTGACATATTTGGGACTATACCTGATGAACGGAAATGGACAACCTGCACTTCTCTACCTTGTTCCATGTACACTAGGTGTCACAGTCATACTGGGATGTATAAGAGGTGAGTTGGAGAGCCTTTGGAATTATGGCACAGACTCATCGTTGTCCACAGAGCCCCCTGGCTCTGAAGTTTAA

Predicted protein sequences of Glyma18g53880

Limit To All Plant Sequences

>Glyma18g53880.1   sequence type=predicted peptide   gene model=Glyma18g53880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTFRVLLLLVVLLFVIGAGADDAKRDDDRAPKSESCNNPFQLVKVESWVDGEEGHVHNGVSARFGSVLPDKPDKSVRTPAIFANPIDCCSNSTSKLSGSVALCVRGGCDFTVKAYFAQSGAATAILVINDSQDLFEMVCSNSSEANISIPVVMIAKSAGQSLNKSFTSGSKVEILLYAPPRPLVDFSVAFLWLMSVGTIVCASLWSDLTTPEKSDERYNKLCPKESSNAETEKDDLDKEIVNIDSKGAVIFVIAASTFLVLLFFFMSTWFVWVLIVLFCIGGIEGMHNCIVSLTLRKCQNCGQKTVSLPLFGEISIFSLAVLLFCVAFAIFWAATRQESYSWTGQDILGICLMITVLQLARLPNIKVATVLLCCAFVYDIFWVFISPVIFHESVMIAVARGDKAGGEAIPMLLRFPRLFDPWGGYDMIGFGDILFPGLLISFAHRFDKDNGRGASNGYFLWLVVGYGIGLVLTYLGLYLMNGNGQPALLYLVPCTLGVTVILGCIRGELESLWNYGTDSSLSTEPPGSEV*

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