Report for Sequence Feature Glyma18g53860
Feature Type: gene_model
Chromosome: Gm18
Start: 62131579
stop: 62133642
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g53860
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G43120 AT
Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein | chr2:17927339-17928871 FORWARD LENGTH=321
SoyBase E_val: 2.00E-155 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
PTHR13903 Panther
PIRIN-RELATED
JGI ISS
PF02678 PFAM
Pirin
JGI ISS
PF05726 PFAM
Pirin C-terminal cupin domain
JGI ISS
UniRef100_B9SN16 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pirin, putative n=1 Tax=Ricinus communis RepID=B9SN16_RICCO
SoyBase E_val: 1.00E-166 ISS
UniRef100_I1N5F6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5F6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g53860
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g53860
Paralog Evidence Comments
Glyma08g47620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g53860 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g300500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g53860
Coding sequences of Glyma18g53860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g53860.1 sequence type=CDS gene model=Glyma18g53860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGAGCTATAAGTCACCACCTTCTAGTTTCACTACTCGATTGGAGAATCTCTACCTCACGATCCCTTTTTTCTCTTAGAACCATCATGTCACAATCTGATCATTCCTCTGCTTTTACCACACCCAGATTAGTTCTCAAGAAGGTTTTGGCCAAATCTCAACATGAAGGGGATGGAGCTGTTGTTAGAAGAGGCATTGGAAGGAGCGAGTTGAAGAACTTGGATCCCTTCCTAATGTTGGATCACTTCTCAGTATCTCCCCCAGCAGGATTTCCGGATCATCCACACCGAGGTTTTGAAACCGTCACCTACATGCTAGAGGGAGGCATCACTCACCAAGATTTTGCTGGGCACAAGGGTACAATAAGAAAGGGTGATGTTCAGTGGATGACCGCAGGCAGGGGAATCATTCACTCTGAAATGCCCGCAGAAGCAAACAACAACAAGGGATTGCAACTATGGATCAATTTATCATCCAGGGACAAAATGATGGAGCCTAACTACCAAGAGCTTCCAAGTGAGAACATACCAAGAGCAGAAAAAGATGGGGTTGAAGTGAGAGTGATAGCAGGAGAAGCAATGGGAGTGCATTCGCCTGTGTACACACGAACACCAACCATGTACCTTGTTTTCTGCATGATGCCCGGAACTCAGTGGCATCAGAGGATTCCAGAGTCGTGGAATGCCTTTGTTTATACAATTGAAGGGGAAGGAGTATTCGGGTGTCCAAGTTCATCCCCAACAGTGGCACACCATGTCCTTGTTTTGAGTCAAGGTGATGGCCTTAGCGTATGGAATAACTCTTCCAAGCCTTTGAGGTTTGTTCTGATTGGAGGCCAACCACTGAACGAGCCAGTTGTTCAGTATGGGCCTTTTGTGATGAACACACAGTCTGAGATTGAGAAGACAATTGAAGACTATCACTATGGCAGGAATGGCTTTGAGATGAGCAAGTATTGGATGTCTCAACAGTAA
Predicted protein sequences of Glyma18g53860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g53860.1 sequence type=predicted peptide gene model=Glyma18g53860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRAISHHLLVSLLDWRISTSRSLFSLRTIMSQSDHSSAFTTPRLVLKKVLAKSQHEGDGAVVRRGIGRSELKNLDPFLMLDHFSVSPPAGFPDHPHRGFETVTYMLEGGITHQDFAGHKGTIRKGDVQWMTAGRGIIHSEMPAEANNNKGLQLWINLSSRDKMMEPNYQELPSENIPRAEKDGVEVRVIAGEAMGVHSPVYTRTPTMYLVFCMMPGTQWHQRIPESWNAFVYTIEGEGVFGCPSSSPTVAHHVLVLSQGDGLSVWNNSSKPLRFVLIGGQPLNEPVVQYGPFVMNTQSEIEKTIEDYHYGRNGFEMSKYWMSQQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
