Glyma18g53810 - SoyBase

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Report for Sequence Feature Glyma18g53810

Feature Type:	gene_model
Chromosome:	Gm18
Start:	62064546
stop:	62072118
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13670	AT	Annotation by Michelle Graham. TAIR10: Protein kinase family protein \| chr3:4469434-4473234 FORWARD LENGTH=703	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1164	KOG	Casein kinase (serine/threonine/tyrosine protein kinase)	JGI		ISS
PTHR11909	Panther	CASEIN KINASE-RELATED	JGI		ISS
PTHR11909:SF20	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7KWQ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Casein kinase I isoform alpha n=1 Tax=Medicago truncatula RepID=G7KWQ1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F420	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F420 related cluster n=1 Tax=unknown RepID=UPI000233F420	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g53810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53810

Paralog	Evidence	Comments
Glyma08g47680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g300100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g53810

Limit To All Plant Sequences

>Glyma18g53810.2   sequence type=transcript   gene model=Glyma18g53810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCTGCTAGCTATCATTCACTTTCCCCATCCATCCATCCACCGAACCCTAACCCTAATCCTCCATCATCGATTTGACTCGATTCTCTCGCTGTCTGTTATTTCCTTCAAAGCAAAACAATTCCATCGATGAATCGGGCGTCGCAGCTTTCGTGATAATGATCTTGGCGCTGCGAATCGATTGCATGGGTTTGGAGAATGCCGGAGCTTCGTAGTGGACCGCGACGACGTCGTGCTCCGGTTGCTCGTAAAAGCTCCGAACCACCGTCTCCGGCCGGGAGATACGTCAAGACTCGCGCTGCAGTCGCCAGAGAGGCAGCGGCGGTGGAGAGGCCAAGAACTCGTTTGGCGGCCAAAAAAGAGGAGAATCCCCTTATAATAATATCCGATCACACTAAGAAAGACGACGCTGCCGCCATGGCCGACGAGAGTGGTGGCTTGAGTGCAAACAAGGGCGTTGCTCAAGAAGATGACACCAACGCAGCTCCTTTTCCGGAGAGGGTTCAAGTAGGAGGATCACCTGTCTACAAAGTAGAGAGGAAACTGGGCAAAGGTGGCTTTGGACAGGTTTTTGTTGGCCGTCGAGTCACTGGTGGTAACGATCGGACCACTGGTGCTGGTGCCACTGAGGTGGCATTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAATTATGGCCCTCCTTACGAGTGGCAAGTATACAACACCCTTGGTGGCAGCCATGGAATACCTAAAGTACACTACAAAGGAAGACAAGGGGAATATTATGTGATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTTTGGAATTCCTCAAGCCAGGCTATGACTGCGGAAATGGTTGCATGTATAGCAGTCGAGTCCCTATCGATCCTGGAGAAGATGCATGCAAGAGGCTATGTGCATGGAGATGTAAAACCAGAAAACTTTTTACTAGGTCAACCTTCTACACCACAAGAAAAGAAATTATTTCTTGTAGACCTTGGATTAGCAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATCTTCCTTCATAAAGGCAGGTTACCTTGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGCTATGCTGTTTTTGCCCTGCTCCTTTTAGGCAGTTCCTTGAGATTGTAGTAAACATGAAGTTTGATGAAGAACCTAACTATTCCAGGCTAATATCTTTGTTTGATGGTATGCTTGGACCGAATCCTGCATTGAGGCCAATTAACACTGAAGGTGCTCAAAAGGTTGGGCAGAAGAGGGGTAGATTGAATATTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGCAAGATTAGCGCAACATGTGGAGAGAGGGATTGCAGATGGCCTTCTAATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCCCTTATTATGGATGCTGGAACTGGCTTTTCAAGTCAAGTTTATAAGTTGTCACCATTTTTCTTACACAAGGAATGGATCATGGAACAGTGGGAAAAGAACTATTACATTACTTCTATTGCAGGGGCTAATAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACACAACAATCATACAAAGTAAGTGACTCATTCCCATTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCGCGAAATGCCGGATTCAGTGATCAGGTTTGCTTTATATTTAGATTCAATTGATTAGTTTTCATCAGGTAAAATTAAGGCTGGAAAATCTGTATTTGATAACTCTCATCTCATGTTGAGTTTAAAATGCAGGCATGTTTTTATGACAGCTTGGTTGAATTTTTCTTTGGAAATTAATTGATTTAAGATACTTATTGCTCACATACAGTTTCTTTTTCTAATGGTTATGCGCAAAAACTCTTGTTGAGTTGAAATAGTCTGTACTTCAATTATTGAGTCTCTGCCACTATACCTAATCCTTGCTCTCATTATCCATCTTTTAAATGTAGGTTGTTGAACTTGATTTTCTCTATCCTAGTGAGGGAATCCACAGGCGATGGGATAATGGTTATAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATACTGAGCATTCCTAGGCGCAGGCCCGGAGATGAAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAGTATGCTGATTTCCTTTACGGGCCAAAGTATTTTGTGTCTGAAATTTATATATTTTGTAATGGCCCAATCGCGTATAACATAGCAGAGAATTGTTGTATCTTTAGTATTATTATCCCCACCCATCCTATTACAAGTTCCTTGGGGGTGGGGGATGTGGCAGTTAATGTATACAGCTTAGCTTTATATGTTACTCTAATATGTATTATATGTAGGTTTTATCAAATTTTTTGTCGGATTTTCAAGATTGTCTCCGTGACTTGTCTAATAAAAACATTTTATGGATAGCTTTCCTTGTGAATAAAGAGTCCAATAATTTTAACTTTCCT

Coding sequences of Glyma18g53810

Limit To All Plant Sequences

>Glyma18g53810.1   sequence type=CDS   gene model=Glyma18g53810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGAGCTTCGTAGTGGACCGCGACGACGTCGTGCTCCGGTTGCTCGTAAAAGCTCCGAACCACCGTCTCCGGCCGGGAGATACGTCAAGACTCGCGCTGCAGTCGCCAGAGAGGCAGCGGCGGTGGAGAGGCCAAGAACTCGTTTGGCGGCCAAAAAAGAGGAGAATCCCCTTATAATAATATCCGATCACACTAAGAAAGACGACGCTGCCGCCATGGCCGACGAGAGTGGTGGCTTGAGTGCAAACAAGGGCGTTGCTCAAGAAGATGACACCAACGCAGCTCCTTTTCCGGAGAGGGTTCAAGTAGGAGGATCACCTGTCTACAAAGTAGAGAGGAAACTGGGCAAAGGTGGCTTTGGACAGGTTTTTGTTGGCCGTCGAGTCACTGGTGGTAACGATCGGACCACTGGTGCTGGTGCCACTGAGGTGGCATTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAATTATGGCCCTCCTTACGAGTGGCAAGTATACAACACCCTTGGTGGCAGCCATGGAATACCTAAAGTACACTACAAAGGAAGACAAGGGGAATATTATGTGATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTTTGGAATTCCTCAAGCCAGGCTATGACTGCGGAAATGGTTGCATGTATAGCAGTCGAGTCCCTATCGATCCTGGAGAAGATGCATGCAAGAGGCTATGTGCATGGAGATGTAAAACCAGAAAACTTTTTACTAGGTCAACCTTCTACACCACAAGAAAAGAAATTATTTCTTGTAGACCTTGGATTAGCAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATCTTCCTTCATAAAGGCAGGTTACCTTGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGCTATGCTGTTTTTGCCCTGCTCCTTTTAGGCAGTTCCTTGAGATTGTAGTAAACATGAAGTTTGATGAAGAACCTAACTATTCCAGGCTAATATCTTTGTTTGATGGTATGCTTGGACCGAATCCTGCATTGAGGCCAATTAACACTGAAGGTGCTCAAAAGGTTGGGCAGAAGAGGGGTAGATTGAATATTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGCAAGATTAGCGCAACATGTGGAGAGAGGGATTGCAGATGGCCTTCTAATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCCCTTATTATGGATGCTGGAACTGGCTTTTCAAGTCAAGTTTATAAGTTGTCACCATTTTTCTTACACAAGGAATGGATCATGGAACAGTGGGAAAAGAACTATTACATTACTTCTATTGCAGGGGCTAATAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACACAACAATCATACAAAGTAAGTGACTCATTCCCATTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCGCGAAATGCCGGATTCAGTGATCAGGTTGTTGAACTTGATTTTCTCTATCCTAGTGAGGGAATCCACAGGCGATGGGATAATGGTTATAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATACTGAGCATTCCTAGGCGCAGGCCCGGAGATGAAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAGTATGCTGA

>Glyma18g53810.2   sequence type=CDS   gene model=Glyma18g53810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGAGCTTCGTAGTGGACCGCGACGACGTCGTGCTCCGGTTGCTCGTAAAAGCTCCGAACCACCGTCTCCGGCCGGGAGATACGTCAAGACTCGCGCTGCAGTCGCCAGAGAGGCAGCGGCGGTGGAGAGGCCAAGAACTCGTTTGGCGGCCAAAAAAGAGGAGAATCCCCTTATAATAATATCCGATCACACTAAGAAAGACGACGCTGCCGCCATGGCCGACGAGAGTGGTGGCTTGAGTGCAAACAAGGGCGTTGCTCAAGAAGATGACACCAACGCAGCTCCTTTTCCGGAGAGGGTTCAAGTAGGAGGATCACCTGTCTACAAAGTAGAGAGGAAACTGGGCAAAGGTGGCTTTGGACAGGTTTTTGTTGGCCGTCGAGTCACTGGTGGTAACGATCGGACCACTGGTGCTGGTGCCACTGAGGTGGCATTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAATTATGGCCCTCCTTACGAGTGGCAAGTATACAACACCCTTGGTGGCAGCCATGGAATACCTAAAGTACACTACAAAGGAAGACAAGGGGAATATTATGTGATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTTTGGAATTCCTCAAGCCAGGCTATGACTGCGGAAATGGTTGCATGTATAGCAGTCGAGTCCCTATCGATCCTGGAGAAGATGCATGCAAGAGGCTATGTGCATGGAGATGTAAAACCAGAAAACTTTTTACTAGGTCAACCTTCTACACCACAAGAAAAGAAATTATTTCTTGTAGACCTTGGATTAGCAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATCTTCCTTCATAAAGGCAGGTTACCTTGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGCTATGCTGTTTTTGCCCTGCTCCTTTTAGGCAGTTCCTTGAGATTGTAGTAAACATGAAGTTTGATGAAGAACCTAACTATTCCAGGCTAATATCTTTGTTTGATGGTATGCTTGGACCGAATCCTGCATTGAGGCCAATTAACACTGAAGGTGCTCAAAAGGTTGGGCAGAAGAGGGGTAGATTGAATATTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGCAAGATTAGCGCAACATGTGGAGAGAGGGATTGCAGATGGCCTTCTAATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCCCTTATTATGGATGCTGGAACTGGCTTTTCAAGTCAAGTTTATAAGTTGTCACCATTTTTCTTACACAAGGAATGGATCATGGAACAGTGGGAAAAGAACTATTACATTACTTCTATTGCAGGGGCTAATAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACACAACAATCATACAAAGTAAGTGACTCATTCCCATTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCGCGAAATGCCGGATTCAGTGATCAGGTTTGCTTTATATTTAGATTCAATTGA

Predicted protein sequences of Glyma18g53810

Limit To All Plant Sequences

>Glyma18g53810.1   sequence type=predicted peptide   gene model=Glyma18g53810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPELRSGPRRRRAPVARKSSEPPSPAGRYVKTRAAVAREAAAVERPRTRLAAKKEENPLIIISDHTKKDDAAAMADESGGLSANKGVAQEDDTNAAPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRTTGAGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMTAEMVACIAVESLSILEKMHARGYVHGDVKPENFLLGQPSTPQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEIVVNMKFDEEPNYSRLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFSSQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC*

>Glyma18g53810.2   sequence type=predicted peptide   gene model=Glyma18g53810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPELRSGPRRRRAPVARKSSEPPSPAGRYVKTRAAVAREAAAVERPRTRLAAKKEENPLIIISDHTKKDDAAAMADESGGLSANKGVAQEDDTNAAPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRTTGAGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMTAEMVACIAVESLSILEKMHARGYVHGDVKPENFLLGQPSTPQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEIVVNMKFDEEPNYSRLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFSSQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVCFIFRFN*

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